Gene : AT3G17310 A. thaliana TAIR10
Defline:  (1 of 1) PTHR23068//PTHR23068:SF11 - DNA CYTOSINE-5- -METHYLTRANSFERASE 3-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1781
Name:  ? AT3G17310 Secondary Identifier:  ? PAC:19661359
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G17310 0.5kb upstream 0.5kb upstream 4742 true Chr3: 5909001-5913742 Arabidopsis thaliana
AT3G17310 0.5kb upstream 0.5kb upstream 500 false Chr3: 5913243-5913742 Arabidopsis thaliana
AT3G17310 0.5kb downstream 0.5kb downstream 4742 true Chr3: 5908501-5913242 Arabidopsis thaliana
AT3G17310 0.5kb downstream 0.5kb downstream 500 false Chr3: 5908501-5909000 Arabidopsis thaliana
AT3G17310 1.0kb upstream 1.0kb upstream 5242 true Chr3: 5909001-5914242 Arabidopsis thaliana
AT3G17310 1.0kb upstream 1.0kb upstream 1000 false Chr3: 5913243-5914242 Arabidopsis thaliana
AT3G17310 1.0kb downstream 1.0kb downstream 5242 true Chr3: 5908001-5913242 Arabidopsis thaliana
AT3G17310 1.0kb downstream 1.0kb downstream 1000 false Chr3: 5908001-5909000 Arabidopsis thaliana
AT3G17310 2.0kb upstream 2.0kb upstream 6242 true Chr3: 5909001-5915242 Arabidopsis thaliana
AT3G17310 2.0kb upstream 2.0kb upstream 2000 false Chr3: 5913243-5915242 Arabidopsis thaliana
AT3G17310 2.0kb downstream 2.0kb downstream 6242 true Chr3: 5907001-5913242 Arabidopsis thaliana
AT3G17310 2.0kb downstream 2.0kb downstream 2000 false Chr3: 5907001-5909000 Arabidopsis thaliana
AT3G17310 5.0kb upstream 5.0kb upstream 9242 true Chr3: 5909001-5918242 Arabidopsis thaliana
AT3G17310 5.0kb upstream 5.0kb upstream 5000 false Chr3: 5913243-5918242 Arabidopsis thaliana
AT3G17310 5.0kb downstream 5.0kb downstream 9242 true Chr3: 5904001-5913242 Arabidopsis thaliana
AT3G17310 5.0kb downstream 5.0kb downstream 5000 false Chr3: 5904001-5909000 Arabidopsis thaliana
AT3G17310 10.0kb upstream 10.0kb upstream 14242 true Chr3: 5909001-5923242 Arabidopsis thaliana
AT3G17310 10.0kb upstream 10.0kb upstream 10000 false Chr3: 5913243-5923242 Arabidopsis thaliana
AT3G17310 10.0kb downstream 10.0kb downstream 14242 true Chr3: 5899001-5913242 Arabidopsis thaliana
AT3G17310 10.0kb downstream 10.0kb downstream 10000 false Chr3: 5899001-5909000 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361311 5261 Brassicaceae View MSA
123828684 5264 Brassicales-Malvales View MSA
124344928 5266 SBM View MSA
124237630 5268 Malvidae View MSA
124066884 5270 Rosid View MSA
123739152 5271 Pentapetalae View MSA
122785997 5272 Eudicot View MSA
122049231 5273 Angiosperm View MSA
121350699 5274 Embryophyte View MSA
123381851 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.862        
cufflinks 6.391       High
cufflinks 3.234        
cufflinks 6.034        
cufflinks 3.016       Low
cufflinks 5.395        

0 Strain