Gene : AT3G57800 A. thaliana TAIR10
Defline:  (1 of 2) PTHR12565//PTHR12565:SF112 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BHLH48-RELATED Genomic Order:  4835
Name:  ? AT3G57800 Secondary Identifier:  ? PAC:19660898
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G57800 0.5kb upstream 0.5kb upstream 4433 true Chr3: 21407789-21412221 Arabidopsis thaliana
AT3G57800 0.5kb upstream 0.5kb upstream 500 false Chr3: 21411722-21412221 Arabidopsis thaliana
AT3G57800 0.5kb downstream 0.5kb downstream 4433 true Chr3: 21407289-21411721 Arabidopsis thaliana
AT3G57800 0.5kb downstream 0.5kb downstream 500 false Chr3: 21407289-21407788 Arabidopsis thaliana
AT3G57800 1.0kb upstream 1.0kb upstream 4933 true Chr3: 21407789-21412721 Arabidopsis thaliana
AT3G57800 1.0kb upstream 1.0kb upstream 1000 false Chr3: 21411722-21412721 Arabidopsis thaliana
AT3G57800 1.0kb downstream 1.0kb downstream 4933 true Chr3: 21406789-21411721 Arabidopsis thaliana
AT3G57800 1.0kb downstream 1.0kb downstream 1000 false Chr3: 21406789-21407788 Arabidopsis thaliana
AT3G57800 2.0kb upstream 2.0kb upstream 5933 true Chr3: 21407789-21413721 Arabidopsis thaliana
AT3G57800 2.0kb upstream 2.0kb upstream 2000 false Chr3: 21411722-21413721 Arabidopsis thaliana
AT3G57800 2.0kb downstream 2.0kb downstream 5933 true Chr3: 21405789-21411721 Arabidopsis thaliana
AT3G57800 2.0kb downstream 2.0kb downstream 2000 false Chr3: 21405789-21407788 Arabidopsis thaliana
AT3G57800 5.0kb upstream 5.0kb upstream 8933 true Chr3: 21407789-21416721 Arabidopsis thaliana
AT3G57800 5.0kb upstream 5.0kb upstream 5000 false Chr3: 21411722-21416721 Arabidopsis thaliana
AT3G57800 5.0kb downstream 5.0kb downstream 8933 true Chr3: 21402789-21411721 Arabidopsis thaliana
AT3G57800 5.0kb downstream 5.0kb downstream 5000 false Chr3: 21402789-21407788 Arabidopsis thaliana
AT3G57800 10.0kb upstream 10.0kb upstream 13933 true Chr3: 21407789-21421721 Arabidopsis thaliana
AT3G57800 10.0kb upstream 10.0kb upstream 10000 false Chr3: 21411722-21421721 Arabidopsis thaliana
AT3G57800 10.0kb downstream 10.0kb downstream 13933 true Chr3: 21397789-21411721 Arabidopsis thaliana
AT3G57800 10.0kb downstream 10.0kb downstream 10000 false Chr3: 21397789-21407788 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122329907 5261 Brassicaceae Singleton cluster - no MSA
123771189 5264 Brassicales-Malvales Singleton cluster - no MSA
124269721 5266 SBM Singleton cluster - no MSA
124247931 5268 Malvidae View MSA
124063738 5270 Rosid View MSA
123737117 5271 Pentapetalae View MSA
122769887 5272 Eudicot View MSA
122044005 5273 Angiosperm View MSA
121310224 5274 Embryophyte View MSA
123347772 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.98       High
cufflinks 0.714       Low
cufflinks 4.382        
cufflinks 0.851        
cufflinks 3.945        
cufflinks 1.051        

0 Strain