Gene : AT3G56600 A. thaliana TAIR10
Defline:  (1 of 3) PTHR15245:SF23 - PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1-RELATED Genomic Order:  4711
Name:  ? AT3G56600 Secondary Identifier:  ? PAC:19665154
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6351 Arabidopsis thaliana pathologic  
Athaliana PWY-6352 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G56600 0.5kb upstream 0.5kb upstream 2970 true Chr3: 20967944-20970913 Arabidopsis thaliana
AT3G56600 0.5kb upstream 0.5kb upstream 500 false Chr3: 20967944-20968443 Arabidopsis thaliana
AT3G56600 0.5kb downstream 0.5kb downstream 2970 true Chr3: 20968444-20971413 Arabidopsis thaliana
AT3G56600 0.5kb downstream 0.5kb downstream 500 false Chr3: 20970914-20971413 Arabidopsis thaliana
AT3G56600 1.0kb upstream 1.0kb upstream 3470 true Chr3: 20967444-20970913 Arabidopsis thaliana
AT3G56600 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20967444-20968443 Arabidopsis thaliana
AT3G56600 1.0kb downstream 1.0kb downstream 3470 true Chr3: 20968444-20971913 Arabidopsis thaliana
AT3G56600 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20970914-20971913 Arabidopsis thaliana
AT3G56600 2.0kb upstream 2.0kb upstream 4470 true Chr3: 20966444-20970913 Arabidopsis thaliana
AT3G56600 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20966444-20968443 Arabidopsis thaliana
AT3G56600 2.0kb downstream 2.0kb downstream 4470 true Chr3: 20968444-20972913 Arabidopsis thaliana
AT3G56600 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20970914-20972913 Arabidopsis thaliana
AT3G56600 5.0kb upstream 5.0kb upstream 7470 true Chr3: 20963444-20970913 Arabidopsis thaliana
AT3G56600 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20963444-20968443 Arabidopsis thaliana
AT3G56600 5.0kb downstream 5.0kb downstream 7470 true Chr3: 20968444-20975913 Arabidopsis thaliana
AT3G56600 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20970914-20975913 Arabidopsis thaliana
AT3G56600 10.0kb upstream 10.0kb upstream 12470 true Chr3: 20958444-20970913 Arabidopsis thaliana
AT3G56600 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20958444-20968443 Arabidopsis thaliana
AT3G56600 10.0kb downstream 10.0kb downstream 12470 true Chr3: 20968444-20980913 Arabidopsis thaliana
AT3G56600 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20970914-20980913 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028211 5273 Angiosperm View MSA
122363835 5261 Brassicaceae View MSA
123798625 5264 Brassicales-Malvales View MSA
124350299 5266 SBM View MSA
124236907 5268 Malvidae View MSA
124066276 5270 Rosid View MSA
123740399 5271 Pentapetalae View MSA
122769978 5272 Eudicot View MSA
123429040 5275 Viridiplantae View MSA
121297732 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.032     Low  
cufflinks 0.212     Low High
cufflinks 0.026     Low  
cufflinks 0.137     Low  
cufflinks 0.011     Low Low
cufflinks 0.106     Low  

0 Strain