Gene : AT3G56330 A. thaliana TAIR10
Defline:  (1 of 1) PTHR10631//PTHR10631:SF2 - N 2 ,N 2 -DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE // N2, N2-DIMETHYLGUANOSINE TRNA METHYLTRANSFERASES-LIKE PROTEIN Genomic Order:  4684
Name:  ? AT3G56330 Secondary Identifier:  ? PAC:19662449
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6829 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G56330 0.5kb upstream 0.5kb upstream 2253 true Chr3: 20889750-20892002 Arabidopsis thaliana
AT3G56330 0.5kb upstream 0.5kb upstream 500 false Chr3: 20889750-20890249 Arabidopsis thaliana
AT3G56330 0.5kb downstream 0.5kb downstream 2253 true Chr3: 20890250-20892502 Arabidopsis thaliana
AT3G56330 0.5kb downstream 0.5kb downstream 500 false Chr3: 20892003-20892502 Arabidopsis thaliana
AT3G56330 1.0kb upstream 1.0kb upstream 2753 true Chr3: 20889250-20892002 Arabidopsis thaliana
AT3G56330 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20889250-20890249 Arabidopsis thaliana
AT3G56330 1.0kb downstream 1.0kb downstream 2753 true Chr3: 20890250-20893002 Arabidopsis thaliana
AT3G56330 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20892003-20893002 Arabidopsis thaliana
AT3G56330 2.0kb upstream 2.0kb upstream 3753 true Chr3: 20888250-20892002 Arabidopsis thaliana
AT3G56330 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20888250-20890249 Arabidopsis thaliana
AT3G56330 2.0kb downstream 2.0kb downstream 3753 true Chr3: 20890250-20894002 Arabidopsis thaliana
AT3G56330 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20892003-20894002 Arabidopsis thaliana
AT3G56330 5.0kb upstream 5.0kb upstream 6753 true Chr3: 20885250-20892002 Arabidopsis thaliana
AT3G56330 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20885250-20890249 Arabidopsis thaliana
AT3G56330 5.0kb downstream 5.0kb downstream 6753 true Chr3: 20890250-20897002 Arabidopsis thaliana
AT3G56330 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20892003-20897002 Arabidopsis thaliana
AT3G56330 10.0kb upstream 10.0kb upstream 11753 true Chr3: 20880250-20892002 Arabidopsis thaliana
AT3G56330 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20880250-20890249 Arabidopsis thaliana
AT3G56330 10.0kb downstream 10.0kb downstream 11753 true Chr3: 20890250-20902002 Arabidopsis thaliana
AT3G56330 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20892003-20902002 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363173 5261 Brassicaceae View MSA
123831847 5264 Brassicales-Malvales View MSA
124342210 5266 SBM View MSA
124240901 5268 Malvidae View MSA
124065467 5270 Rosid View MSA
123748690 5271 Pentapetalae View MSA
122789596 5272 Eudicot View MSA
122048028 5273 Angiosperm View MSA
121348689 5274 Embryophyte View MSA
123425362 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.812       High
cufflinks 1.956       Low
cufflinks 5.875        
cufflinks 2.166        
cufflinks 4.412        
cufflinks 2.195        

0 Strain