Gene : AT3G56060 A. thaliana TAIR10
Defline:  (1 of 4) PTHR11552//PTHR11552:SF141 - GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE // GLUCOSE-METHANOL-CHOLINE (GMC) OXIDOREDUCTASE FAMILY PROTEIN Genomic Order:  4658
Name:  ? AT3G56060 Secondary Identifier:  ? PAC:19661047
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G56060 0.5kb upstream 0.5kb upstream 3381 true Chr3: 20803133-20806513 Arabidopsis thaliana
AT3G56060 0.5kb upstream 0.5kb upstream 500 false Chr3: 20806014-20806513 Arabidopsis thaliana
AT3G56060 0.5kb downstream 0.5kb downstream 3381 true Chr3: 20802633-20806013 Arabidopsis thaliana
AT3G56060 0.5kb downstream 0.5kb downstream 500 false Chr3: 20802633-20803132 Arabidopsis thaliana
AT3G56060 1.0kb upstream 1.0kb upstream 3881 true Chr3: 20803133-20807013 Arabidopsis thaliana
AT3G56060 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20806014-20807013 Arabidopsis thaliana
AT3G56060 1.0kb downstream 1.0kb downstream 3881 true Chr3: 20802133-20806013 Arabidopsis thaliana
AT3G56060 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20802133-20803132 Arabidopsis thaliana
AT3G56060 2.0kb upstream 2.0kb upstream 4881 true Chr3: 20803133-20808013 Arabidopsis thaliana
AT3G56060 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20806014-20808013 Arabidopsis thaliana
AT3G56060 2.0kb downstream 2.0kb downstream 4881 true Chr3: 20801133-20806013 Arabidopsis thaliana
AT3G56060 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20801133-20803132 Arabidopsis thaliana
AT3G56060 5.0kb upstream 5.0kb upstream 7881 true Chr3: 20803133-20811013 Arabidopsis thaliana
AT3G56060 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20806014-20811013 Arabidopsis thaliana
AT3G56060 5.0kb downstream 5.0kb downstream 7881 true Chr3: 20798133-20806013 Arabidopsis thaliana
AT3G56060 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20798133-20803132 Arabidopsis thaliana
AT3G56060 10.0kb upstream 10.0kb upstream 12881 true Chr3: 20803133-20816013 Arabidopsis thaliana
AT3G56060 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20806014-20816013 Arabidopsis thaliana
AT3G56060 10.0kb downstream 10.0kb downstream 12881 true Chr3: 20793133-20806013 Arabidopsis thaliana
AT3G56060 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20793133-20803132 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381651 5261 Brassicaceae View MSA
123837112 5264 Brassicales-Malvales View MSA
124322244 5266 SBM View MSA
124251432 5268 Malvidae View MSA
124065307 5270 Rosid View MSA
123743830 5271 Pentapetalae View MSA
122786087 5272 Eudicot View MSA
122042703 5273 Angiosperm View MSA
121349472 5274 Embryophyte View MSA
123428612 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.354       High
cufflinks 0.143     Low Low
cufflinks 6.376        
cufflinks 0.289     Low  
cufflinks 4.004        
cufflinks 0.387        

0 Strain