Gene : AT3G55920 A. thaliana TAIR10
Defline:  (1 of 3) PTHR11071//PTHR11071:SF291 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE // SUBFAMILY NOT NAMED Genomic Order:  4644
Name:  ? AT3G55920 Secondary Identifier:  ? PAC:19662055
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G55920 0.5kb upstream 0.5kb upstream 2141 true Chr3: 20743443-20745583 Arabidopsis thaliana
AT3G55920 0.5kb upstream 0.5kb upstream 500 false Chr3: 20745084-20745583 Arabidopsis thaliana
AT3G55920 0.5kb downstream 0.5kb downstream 2141 true Chr3: 20742943-20745083 Arabidopsis thaliana
AT3G55920 0.5kb downstream 0.5kb downstream 500 false Chr3: 20742943-20743442 Arabidopsis thaliana
AT3G55920 1.0kb upstream 1.0kb upstream 2641 true Chr3: 20743443-20746083 Arabidopsis thaliana
AT3G55920 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20745084-20746083 Arabidopsis thaliana
AT3G55920 1.0kb downstream 1.0kb downstream 2641 true Chr3: 20742443-20745083 Arabidopsis thaliana
AT3G55920 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20742443-20743442 Arabidopsis thaliana
AT3G55920 2.0kb upstream 2.0kb upstream 3641 true Chr3: 20743443-20747083 Arabidopsis thaliana
AT3G55920 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20745084-20747083 Arabidopsis thaliana
AT3G55920 2.0kb downstream 2.0kb downstream 3641 true Chr3: 20741443-20745083 Arabidopsis thaliana
AT3G55920 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20741443-20743442 Arabidopsis thaliana
AT3G55920 5.0kb upstream 5.0kb upstream 6641 true Chr3: 20743443-20750083 Arabidopsis thaliana
AT3G55920 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20745084-20750083 Arabidopsis thaliana
AT3G55920 5.0kb downstream 5.0kb downstream 6641 true Chr3: 20738443-20745083 Arabidopsis thaliana
AT3G55920 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20738443-20743442 Arabidopsis thaliana
AT3G55920 10.0kb upstream 10.0kb upstream 11641 true Chr3: 20743443-20755083 Arabidopsis thaliana
AT3G55920 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20745084-20755083 Arabidopsis thaliana
AT3G55920 10.0kb downstream 10.0kb downstream 11641 true Chr3: 20733443-20745083 Arabidopsis thaliana
AT3G55920 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20733443-20743442 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372479 5261 Brassicaceae View MSA
123834422 5264 Brassicales-Malvales View MSA
124337922 5266 SBM View MSA
124241868 5268 Malvidae View MSA
124064129 5270 Rosid View MSA
123745258 5271 Pentapetalae View MSA
122785870 5272 Eudicot View MSA
122041792 5273 Angiosperm View MSA
123428973 5275 Viridiplantae View MSA
121346769 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.442        
cufflinks 12.146        
cufflinks 9.273        
cufflinks 11.826        
cufflinks 8.891       Low
cufflinks 13.734       High

0 Strain