Gene : SZF1 A. thaliana TAIR10
Primary Identifier:  ? AT3G55980 Defline:  (1 of 2) PTHR14493:SF51 - ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29-RELATED
Genomic Order:  4650 Name:  ? AT3G55980
Secondary Identifier:  ? PAC:19661630
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G55980 0.5kb upstream 0.5kb upstream 3048 true Chr3: 20775795-20778842 Arabidopsis thaliana
AT3G55980 0.5kb upstream 0.5kb upstream 500 false Chr3: 20775795-20776294 Arabidopsis thaliana
AT3G55980 0.5kb downstream 0.5kb downstream 3048 true Chr3: 20776295-20779342 Arabidopsis thaliana
AT3G55980 0.5kb downstream 0.5kb downstream 500 false Chr3: 20778843-20779342 Arabidopsis thaliana
AT3G55980 1.0kb upstream 1.0kb upstream 3548 true Chr3: 20775295-20778842 Arabidopsis thaliana
AT3G55980 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20775295-20776294 Arabidopsis thaliana
AT3G55980 1.0kb downstream 1.0kb downstream 3548 true Chr3: 20776295-20779842 Arabidopsis thaliana
AT3G55980 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20778843-20779842 Arabidopsis thaliana
AT3G55980 2.0kb upstream 2.0kb upstream 4548 true Chr3: 20774295-20778842 Arabidopsis thaliana
AT3G55980 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20774295-20776294 Arabidopsis thaliana
AT3G55980 2.0kb downstream 2.0kb downstream 4548 true Chr3: 20776295-20780842 Arabidopsis thaliana
AT3G55980 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20778843-20780842 Arabidopsis thaliana
AT3G55980 5.0kb upstream 5.0kb upstream 7548 true Chr3: 20771295-20778842 Arabidopsis thaliana
AT3G55980 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20771295-20776294 Arabidopsis thaliana
AT3G55980 5.0kb downstream 5.0kb downstream 7548 true Chr3: 20776295-20783842 Arabidopsis thaliana
AT3G55980 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20778843-20783842 Arabidopsis thaliana
AT3G55980 10.0kb upstream 10.0kb upstream 12548 true Chr3: 20766295-20778842 Arabidopsis thaliana
AT3G55980 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20766295-20776294 Arabidopsis thaliana
AT3G55980 10.0kb downstream 10.0kb downstream 12548 true Chr3: 20776295-20788842 Arabidopsis thaliana
AT3G55980 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20778843-20788842 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370943 5261 Brassicaceae View MSA
123840721 5264 Brassicales-Malvales View MSA
124351100 5266 SBM View MSA
124251522 5268 Malvidae View MSA
124066606 5270 Rosid View MSA
123753423 5271 Pentapetalae View MSA
122793628 5272 Eudicot View MSA
122049418 5273 Angiosperm View MSA
123429052 5275 Viridiplantae View MSA
121351105 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 81.209     High  
cufflinks 433.899     High High
cufflinks 144.534     High  
cufflinks 300.074     High  
cufflinks 62.306     High Low
cufflinks 369.297     High  

0 Strain