Gene : CDT1B A. thaliana TAIR10
Primary Identifier:  ? AT3G54710 Defline:  (1 of 1) PTHR28637:SF1 - DNA REPLICATION FACTOR CDT1
Genomic Order:  4509 Name:  ? AT3G54710
Secondary Identifier:  ? PAC:19663723
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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G54710 0.5kb upstream 0.5kb upstream 2859 true Chr3: 20251341-20254199 Arabidopsis thaliana
AT3G54710 0.5kb upstream 0.5kb upstream 500 false Chr3: 20251341-20251840 Arabidopsis thaliana
AT3G54710 0.5kb downstream 0.5kb downstream 2859 true Chr3: 20251841-20254699 Arabidopsis thaliana
AT3G54710 0.5kb downstream 0.5kb downstream 500 false Chr3: 20254200-20254699 Arabidopsis thaliana
AT3G54710 1.0kb upstream 1.0kb upstream 3359 true Chr3: 20250841-20254199 Arabidopsis thaliana
AT3G54710 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20250841-20251840 Arabidopsis thaliana
AT3G54710 1.0kb downstream 1.0kb downstream 3359 true Chr3: 20251841-20255199 Arabidopsis thaliana
AT3G54710 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20254200-20255199 Arabidopsis thaliana
AT3G54710 2.0kb upstream 2.0kb upstream 4359 true Chr3: 20249841-20254199 Arabidopsis thaliana
AT3G54710 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20249841-20251840 Arabidopsis thaliana
AT3G54710 2.0kb downstream 2.0kb downstream 4359 true Chr3: 20251841-20256199 Arabidopsis thaliana
AT3G54710 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20254200-20256199 Arabidopsis thaliana
AT3G54710 5.0kb upstream 5.0kb upstream 7359 true Chr3: 20246841-20254199 Arabidopsis thaliana
AT3G54710 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20246841-20251840 Arabidopsis thaliana
AT3G54710 5.0kb downstream 5.0kb downstream 7359 true Chr3: 20251841-20259199 Arabidopsis thaliana
AT3G54710 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20254200-20259199 Arabidopsis thaliana
AT3G54710 10.0kb upstream 10.0kb upstream 12359 true Chr3: 20241841-20254199 Arabidopsis thaliana
AT3G54710 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20241841-20251840 Arabidopsis thaliana
AT3G54710 10.0kb downstream 10.0kb downstream 12359 true Chr3: 20251841-20264199 Arabidopsis thaliana
AT3G54710 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20254200-20264199 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362232 5261 Brassicaceae View MSA
123798330 5264 Brassicales-Malvales View MSA
124295984 5266 SBM View MSA
124148271 5268 Malvidae View MSA
124069616 5270 Rosid View MSA
123747892 5271 Pentapetalae View MSA
122795828 5272 Eudicot View MSA
122049248 5273 Angiosperm View MSA
121348141 5274 Embryophyte View MSA
123380741 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.83        
cufflinks 3.022        
cufflinks 1.012        
cufflinks 2.81        
cufflinks 0.563       Low
cufflinks 4.405       High

0 Strain