Gene : RPB5E A. thaliana TAIR10
Primary Identifier:  ? AT3G54490 Defline:  (1 of 1) PTHR10535//PTHR10535:SF5 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 // DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5C
Genomic Order:  4487 Name:  ? AT3G54490
Secondary Identifier:  ? PAC:19662043
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G54490 0.5kb upstream 0.5kb upstream 2344 true Chr3: 20173119-20175462 Arabidopsis thaliana
AT3G54490 0.5kb upstream 0.5kb upstream 500 false Chr3: 20173119-20173618 Arabidopsis thaliana
AT3G54490 0.5kb downstream 0.5kb downstream 2344 true Chr3: 20173619-20175962 Arabidopsis thaliana
AT3G54490 0.5kb downstream 0.5kb downstream 500 false Chr3: 20175463-20175962 Arabidopsis thaliana
AT3G54490 1.0kb upstream 1.0kb upstream 2844 true Chr3: 20172619-20175462 Arabidopsis thaliana
AT3G54490 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20172619-20173618 Arabidopsis thaliana
AT3G54490 1.0kb downstream 1.0kb downstream 2844 true Chr3: 20173619-20176462 Arabidopsis thaliana
AT3G54490 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20175463-20176462 Arabidopsis thaliana
AT3G54490 2.0kb upstream 2.0kb upstream 3844 true Chr3: 20171619-20175462 Arabidopsis thaliana
AT3G54490 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20171619-20173618 Arabidopsis thaliana
AT3G54490 2.0kb downstream 2.0kb downstream 3844 true Chr3: 20173619-20177462 Arabidopsis thaliana
AT3G54490 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20175463-20177462 Arabidopsis thaliana
AT3G54490 5.0kb upstream 5.0kb upstream 6844 true Chr3: 20168619-20175462 Arabidopsis thaliana
AT3G54490 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20168619-20173618 Arabidopsis thaliana
AT3G54490 5.0kb downstream 5.0kb downstream 6844 true Chr3: 20173619-20180462 Arabidopsis thaliana
AT3G54490 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20175463-20180462 Arabidopsis thaliana
AT3G54490 10.0kb upstream 10.0kb upstream 11844 true Chr3: 20163619-20175462 Arabidopsis thaliana
AT3G54490 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20163619-20173618 Arabidopsis thaliana
AT3G54490 10.0kb downstream 10.0kb downstream 11844 true Chr3: 20173619-20185462 Arabidopsis thaliana
AT3G54490 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20175463-20185462 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366690 5261 Brassicaceae View MSA
123831164 5264 Brassicales-Malvales View MSA
124337139 5266 SBM View MSA
124244665 5268 Malvidae View MSA
124060550 5270 Rosid View MSA
123741650 5271 Pentapetalae View MSA
122792617 5272 Eudicot View MSA
122051300 5273 Angiosperm View MSA
121352511 5274 Embryophyte View MSA
123382830 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.024     Low  
cufflinks 0.008     Low Low
cufflinks 0.037     Low  
cufflinks 0.037     Low  
cufflinks 0.021     Low  
cufflinks 0.008     Low Low

0 Strain