Gene : AT3G49370 A. thaliana TAIR10
Defline:  (1 of 2) PTHR24349//PTHR24349:SF90 - SERINE/THREONINE-PROTEIN KINASE // SUBFAMILY NOT NAMED Genomic Order:  3935
Name:  ? AT3G49370 Secondary Identifier:  ? PAC:19664400
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G49370 0.5kb upstream 0.5kb upstream 3665 true Chr3: 18304742-18308406 Arabidopsis thaliana
AT3G49370 0.5kb upstream 0.5kb upstream 500 false Chr3: 18307907-18308406 Arabidopsis thaliana
AT3G49370 0.5kb downstream 0.5kb downstream 3665 true Chr3: 18304242-18307906 Arabidopsis thaliana
AT3G49370 0.5kb downstream 0.5kb downstream 500 false Chr3: 18304242-18304741 Arabidopsis thaliana
AT3G49370 1.0kb upstream 1.0kb upstream 4165 true Chr3: 18304742-18308906 Arabidopsis thaliana
AT3G49370 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18307907-18308906 Arabidopsis thaliana
AT3G49370 1.0kb downstream 1.0kb downstream 4165 true Chr3: 18303742-18307906 Arabidopsis thaliana
AT3G49370 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18303742-18304741 Arabidopsis thaliana
AT3G49370 2.0kb upstream 2.0kb upstream 5165 true Chr3: 18304742-18309906 Arabidopsis thaliana
AT3G49370 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18307907-18309906 Arabidopsis thaliana
AT3G49370 2.0kb downstream 2.0kb downstream 5165 true Chr3: 18302742-18307906 Arabidopsis thaliana
AT3G49370 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18302742-18304741 Arabidopsis thaliana
AT3G49370 5.0kb upstream 5.0kb upstream 8165 true Chr3: 18304742-18312906 Arabidopsis thaliana
AT3G49370 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18307907-18312906 Arabidopsis thaliana
AT3G49370 5.0kb downstream 5.0kb downstream 8165 true Chr3: 18299742-18307906 Arabidopsis thaliana
AT3G49370 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18299742-18304741 Arabidopsis thaliana
AT3G49370 10.0kb upstream 10.0kb upstream 13165 true Chr3: 18304742-18317906 Arabidopsis thaliana
AT3G49370 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18307907-18317906 Arabidopsis thaliana
AT3G49370 10.0kb downstream 10.0kb downstream 13165 true Chr3: 18294742-18307906 Arabidopsis thaliana
AT3G49370 10.0kb downstream 10.0kb downstream 10000 false Chr3: 18294742-18304741 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372155 5261 Brassicaceae View MSA
123800308 5264 Brassicales-Malvales View MSA
124349712 5266 SBM View MSA
124239826 5268 Malvidae View MSA
124071018 5270 Rosid View MSA
123749473 5271 Pentapetalae View MSA
122789222 5272 Eudicot View MSA
122047045 5273 Angiosperm View MSA
121343860 5274 Embryophyte View MSA
123379933 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.973       High
cufflinks 0.76       Low
cufflinks 1.017        
cufflinks 1.114        
cufflinks 1.237        
cufflinks 0.954        

0 Strain