Gene : RDR6 A. thaliana TAIR10
Primary Identifier:  ? AT3G49500 Defline:  (1 of 1) PTHR23079//PTHR23079:SF1 - RNA-DEPENDENT RNA POLYMERASE // PROTEIN RRF-3
Genomic Order:  3948 Name:  ? AT3G49500
Secondary Identifier:  ? PAC:19664100
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G49500 0.5kb upstream 0.5kb upstream 4964 true Chr3: 18349161-18354124 Arabidopsis thaliana
AT3G49500 0.5kb upstream 0.5kb upstream 500 false Chr3: 18353625-18354124 Arabidopsis thaliana
AT3G49500 0.5kb downstream 0.5kb downstream 4964 true Chr3: 18348661-18353624 Arabidopsis thaliana
AT3G49500 0.5kb downstream 0.5kb downstream 500 false Chr3: 18348661-18349160 Arabidopsis thaliana
AT3G49500 1.0kb upstream 1.0kb upstream 5464 true Chr3: 18349161-18354624 Arabidopsis thaliana
AT3G49500 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18353625-18354624 Arabidopsis thaliana
AT3G49500 1.0kb downstream 1.0kb downstream 5464 true Chr3: 18348161-18353624 Arabidopsis thaliana
AT3G49500 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18348161-18349160 Arabidopsis thaliana
AT3G49500 2.0kb upstream 2.0kb upstream 6464 true Chr3: 18349161-18355624 Arabidopsis thaliana
AT3G49500 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18353625-18355624 Arabidopsis thaliana
AT3G49500 2.0kb downstream 2.0kb downstream 6464 true Chr3: 18347161-18353624 Arabidopsis thaliana
AT3G49500 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18347161-18349160 Arabidopsis thaliana
AT3G49500 5.0kb upstream 5.0kb upstream 9464 true Chr3: 18349161-18358624 Arabidopsis thaliana
AT3G49500 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18353625-18358624 Arabidopsis thaliana
AT3G49500 5.0kb downstream 5.0kb downstream 9464 true Chr3: 18344161-18353624 Arabidopsis thaliana
AT3G49500 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18344161-18349160 Arabidopsis thaliana
AT3G49500 10.0kb upstream 10.0kb upstream 14464 true Chr3: 18349161-18363624 Arabidopsis thaliana
AT3G49500 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18353625-18363624 Arabidopsis thaliana
AT3G49500 10.0kb downstream 10.0kb downstream 14464 true Chr3: 18339161-18353624 Arabidopsis thaliana
AT3G49500 10.0kb downstream 10.0kb downstream 10000 false Chr3: 18339161-18349160 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374170 5261 Brassicaceae View MSA
123838821 5264 Brassicales-Malvales View MSA
124322501 5266 SBM View MSA
124236891 5268 Malvidae View MSA
124063849 5270 Rosid View MSA
123737046 5271 Pentapetalae View MSA
122789317 5272 Eudicot View MSA
122045596 5273 Angiosperm View MSA
121346387 5274 Embryophyte View MSA
123428546 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.783        
cufflinks 11.818        
cufflinks 6.046       Low
cufflinks 11.803        
cufflinks 6.281       Low
cufflinks 11.382        

0 Strain