Gene : AT3G48440 A. thaliana TAIR10
Defline:  (1 of 3) PTHR12506//PTHR12506:SF20 - PROTEIN PHOSPHATASE RELATED // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 43 Genomic Order:  3839
Name:  ? AT3G48440 Secondary Identifier:  ? PAC:19659654
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G48440 0.5kb upstream 0.5kb upstream 2675 true Chr3: 17940902-17943576 Arabidopsis thaliana
AT3G48440 0.5kb upstream 0.5kb upstream 500 false Chr3: 17940902-17941401 Arabidopsis thaliana
AT3G48440 0.5kb downstream 0.5kb downstream 2675 true Chr3: 17941402-17944076 Arabidopsis thaliana
AT3G48440 0.5kb downstream 0.5kb downstream 500 false Chr3: 17943577-17944076 Arabidopsis thaliana
AT3G48440 1.0kb upstream 1.0kb upstream 3175 true Chr3: 17940402-17943576 Arabidopsis thaliana
AT3G48440 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17940402-17941401 Arabidopsis thaliana
AT3G48440 1.0kb downstream 1.0kb downstream 3175 true Chr3: 17941402-17944576 Arabidopsis thaliana
AT3G48440 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17943577-17944576 Arabidopsis thaliana
AT3G48440 2.0kb upstream 2.0kb upstream 4175 true Chr3: 17939402-17943576 Arabidopsis thaliana
AT3G48440 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17939402-17941401 Arabidopsis thaliana
AT3G48440 2.0kb downstream 2.0kb downstream 4175 true Chr3: 17941402-17945576 Arabidopsis thaliana
AT3G48440 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17943577-17945576 Arabidopsis thaliana
AT3G48440 5.0kb upstream 5.0kb upstream 7175 true Chr3: 17936402-17943576 Arabidopsis thaliana
AT3G48440 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17936402-17941401 Arabidopsis thaliana
AT3G48440 5.0kb downstream 5.0kb downstream 7175 true Chr3: 17941402-17948576 Arabidopsis thaliana
AT3G48440 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17943577-17948576 Arabidopsis thaliana
AT3G48440 10.0kb upstream 10.0kb upstream 12175 true Chr3: 17931402-17943576 Arabidopsis thaliana
AT3G48440 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17931402-17941401 Arabidopsis thaliana
AT3G48440 10.0kb downstream 10.0kb downstream 12175 true Chr3: 17941402-17953576 Arabidopsis thaliana
AT3G48440 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17943577-17953576 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370782 5261 Brassicaceae View MSA
123837670 5264 Brassicales-Malvales View MSA
124339834 5266 SBM View MSA
124242397 5268 Malvidae View MSA
124063047 5270 Rosid View MSA
123746859 5271 Pentapetalae View MSA
122797489 5272 Eudicot View MSA
122049599 5273 Angiosperm View MSA
121311496 5274 Embryophyte View MSA
123428726 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.044        
cufflinks 11.286       High
cufflinks 6.472        
cufflinks 10.879        
cufflinks 5.754       Low
cufflinks 10.139        

0 Strain