Gene : REF6 A. thaliana TAIR10
Primary Identifier:  ? AT3G48430 Defline:  (1 of 1) PTHR10694:SF38 - LYSINE-SPECIFIC DEMETHYLASE REF6
Genomic Order:  3838 Name:  ? AT3G48430
Secondary Identifier:  ? PAC:19662836
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G48430 0.5kb upstream 0.5kb upstream 5638 true Chr3: 17935109-17940746 Arabidopsis thaliana
AT3G48430 0.5kb upstream 0.5kb upstream 500 false Chr3: 17935109-17935608 Arabidopsis thaliana
AT3G48430 0.5kb downstream 0.5kb downstream 5638 true Chr3: 17935609-17941246 Arabidopsis thaliana
AT3G48430 0.5kb downstream 0.5kb downstream 500 false Chr3: 17940747-17941246 Arabidopsis thaliana
AT3G48430 1.0kb upstream 1.0kb upstream 6138 true Chr3: 17934609-17940746 Arabidopsis thaliana
AT3G48430 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17934609-17935608 Arabidopsis thaliana
AT3G48430 1.0kb downstream 1.0kb downstream 6138 true Chr3: 17935609-17941746 Arabidopsis thaliana
AT3G48430 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17940747-17941746 Arabidopsis thaliana
AT3G48430 2.0kb upstream 2.0kb upstream 7138 true Chr3: 17933609-17940746 Arabidopsis thaliana
AT3G48430 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17933609-17935608 Arabidopsis thaliana
AT3G48430 2.0kb downstream 2.0kb downstream 7138 true Chr3: 17935609-17942746 Arabidopsis thaliana
AT3G48430 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17940747-17942746 Arabidopsis thaliana
AT3G48430 5.0kb upstream 5.0kb upstream 10138 true Chr3: 17930609-17940746 Arabidopsis thaliana
AT3G48430 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17930609-17935608 Arabidopsis thaliana
AT3G48430 5.0kb downstream 5.0kb downstream 10138 true Chr3: 17935609-17945746 Arabidopsis thaliana
AT3G48430 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17940747-17945746 Arabidopsis thaliana
AT3G48430 10.0kb upstream 10.0kb upstream 15138 true Chr3: 17925609-17940746 Arabidopsis thaliana
AT3G48430 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17925609-17935608 Arabidopsis thaliana
AT3G48430 10.0kb downstream 10.0kb downstream 15138 true Chr3: 17935609-17950746 Arabidopsis thaliana
AT3G48430 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17940747-17950746 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376251 5261 Brassicaceae View MSA
123836454 5264 Brassicales-Malvales View MSA
124347146 5266 SBM View MSA
124250306 5268 Malvidae View MSA
124060683 5270 Rosid View MSA
123752621 5271 Pentapetalae View MSA
122794300 5272 Eudicot View MSA
122042363 5273 Angiosperm View MSA
123428928 5275 Viridiplantae View MSA
121351254 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.804        
cufflinks 9.129        
cufflinks 7.064        
cufflinks 10.546       High
cufflinks 6.796        
cufflinks 9.512        

0 Strain