Gene : LBD27 A. thaliana TAIR10
Primary Identifier:  ? AT3G47870 Defline:  (1 of 1) PTHR31301:SF21 - LOB DOMAIN-CONTAINING PROTEIN 27
Genomic Order:  3774 Name:  ? AT3G47870
Secondary Identifier:  ? PAC:19660134
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G47870 0.5kb upstream 0.5kb upstream 1829 true Chr3: 17659680-17661508 Arabidopsis thaliana
AT3G47870 0.5kb upstream 0.5kb upstream 500 false Chr3: 17661009-17661508 Arabidopsis thaliana
AT3G47870 0.5kb downstream 0.5kb downstream 1829 true Chr3: 17659180-17661008 Arabidopsis thaliana
AT3G47870 0.5kb downstream 0.5kb downstream 500 false Chr3: 17659180-17659679 Arabidopsis thaliana
AT3G47870 1.0kb upstream 1.0kb upstream 2329 true Chr3: 17659680-17662008 Arabidopsis thaliana
AT3G47870 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17661009-17662008 Arabidopsis thaliana
AT3G47870 1.0kb downstream 1.0kb downstream 2329 true Chr3: 17658680-17661008 Arabidopsis thaliana
AT3G47870 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17658680-17659679 Arabidopsis thaliana
AT3G47870 2.0kb upstream 2.0kb upstream 3329 true Chr3: 17659680-17663008 Arabidopsis thaliana
AT3G47870 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17661009-17663008 Arabidopsis thaliana
AT3G47870 2.0kb downstream 2.0kb downstream 3329 true Chr3: 17657680-17661008 Arabidopsis thaliana
AT3G47870 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17657680-17659679 Arabidopsis thaliana
AT3G47870 5.0kb upstream 5.0kb upstream 6329 true Chr3: 17659680-17666008 Arabidopsis thaliana
AT3G47870 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17661009-17666008 Arabidopsis thaliana
AT3G47870 5.0kb downstream 5.0kb downstream 6329 true Chr3: 17654680-17661008 Arabidopsis thaliana
AT3G47870 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17654680-17659679 Arabidopsis thaliana
AT3G47870 10.0kb upstream 10.0kb upstream 11329 true Chr3: 17659680-17671008 Arabidopsis thaliana
AT3G47870 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17661009-17671008 Arabidopsis thaliana
AT3G47870 10.0kb downstream 10.0kb downstream 11329 true Chr3: 17649680-17661008 Arabidopsis thaliana
AT3G47870 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17649680-17659679 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366902 5261 Brassicaceae View MSA
123835870 5264 Brassicales-Malvales View MSA
124343645 5266 SBM View MSA
124243498 5268 Malvidae View MSA
124072820 5270 Rosid View MSA
123752210 5271 Pentapetalae View MSA
122796223 5272 Eudicot View MSA
122048133 5273 Angiosperm View MSA
121350574 5274 Embryophyte View MSA
123381803 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.032     Low  
cufflinks 0.137     Low High
cufflinks 0.059     Low  
cufflinks 0.088     Low  
cufflinks 0.024     Low Low
cufflinks 0.109     Low  

0 Strain