Gene : AT3G47780 A. thaliana TAIR10
Defline:  (1 of 8) PTHR19229//PTHR19229:SF127 - ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA // SUBFAMILY NOT NAMED Genomic Order:  3763
Name:  ? AT3G47780 Secondary Identifier:  ? PAC:19662627
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G47780 0.5kb upstream 0.5kb upstream 5035 true Chr3: 17623979-17629013 Arabidopsis thaliana
AT3G47780 0.5kb upstream 0.5kb upstream 500 false Chr3: 17623979-17624478 Arabidopsis thaliana
AT3G47780 0.5kb downstream 0.5kb downstream 5035 true Chr3: 17624479-17629513 Arabidopsis thaliana
AT3G47780 0.5kb downstream 0.5kb downstream 500 false Chr3: 17629014-17629513 Arabidopsis thaliana
AT3G47780 1.0kb upstream 1.0kb upstream 5535 true Chr3: 17623479-17629013 Arabidopsis thaliana
AT3G47780 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17623479-17624478 Arabidopsis thaliana
AT3G47780 1.0kb downstream 1.0kb downstream 5535 true Chr3: 17624479-17630013 Arabidopsis thaliana
AT3G47780 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17629014-17630013 Arabidopsis thaliana
AT3G47780 2.0kb upstream 2.0kb upstream 6535 true Chr3: 17622479-17629013 Arabidopsis thaliana
AT3G47780 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17622479-17624478 Arabidopsis thaliana
AT3G47780 2.0kb downstream 2.0kb downstream 6535 true Chr3: 17624479-17631013 Arabidopsis thaliana
AT3G47780 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17629014-17631013 Arabidopsis thaliana
AT3G47780 5.0kb upstream 5.0kb upstream 9535 true Chr3: 17619479-17629013 Arabidopsis thaliana
AT3G47780 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17619479-17624478 Arabidopsis thaliana
AT3G47780 5.0kb downstream 5.0kb downstream 9535 true Chr3: 17624479-17634013 Arabidopsis thaliana
AT3G47780 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17629014-17634013 Arabidopsis thaliana
AT3G47780 10.0kb upstream 10.0kb upstream 14535 true Chr3: 17614479-17629013 Arabidopsis thaliana
AT3G47780 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17614479-17624478 Arabidopsis thaliana
AT3G47780 10.0kb downstream 10.0kb downstream 14535 true Chr3: 17624479-17639013 Arabidopsis thaliana
AT3G47780 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17629014-17639013 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041021 5273 Angiosperm View MSA
122367601 5261 Brassicaceae View MSA
123834261 5264 Brassicales-Malvales View MSA
124339149 5266 SBM View MSA
124239829 5268 Malvidae View MSA
124064975 5270 Rosid View MSA
123738851 5271 Pentapetalae View MSA
122789582 5272 Eudicot View MSA
123429075 5275 Viridiplantae View MSA
121349830 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.087        
cufflinks 2.235        
cufflinks 1.668       Low
cufflinks 4.436       High
cufflinks 2.484        
cufflinks 3.085        

0 Strain