Gene : AT3G47550 A. thaliana TAIR10
Defline:  (1 of 2) PTHR23012//PTHR23012:SF57 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED Genomic Order:  3739
Name:  ? AT3G47550 Secondary Identifier:  ? PAC:19661497
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G47550 0.5kb upstream 0.5kb upstream 2583 true Chr3: 17522958-17525540 Arabidopsis thaliana
AT3G47550 0.5kb upstream 0.5kb upstream 500 false Chr3: 17522958-17523457 Arabidopsis thaliana
AT3G47550 0.5kb downstream 0.5kb downstream 2583 true Chr3: 17523458-17526040 Arabidopsis thaliana
AT3G47550 0.5kb downstream 0.5kb downstream 500 false Chr3: 17525541-17526040 Arabidopsis thaliana
AT3G47550 1.0kb upstream 1.0kb upstream 3083 true Chr3: 17522458-17525540 Arabidopsis thaliana
AT3G47550 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17522458-17523457 Arabidopsis thaliana
AT3G47550 1.0kb downstream 1.0kb downstream 3083 true Chr3: 17523458-17526540 Arabidopsis thaliana
AT3G47550 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17525541-17526540 Arabidopsis thaliana
AT3G47550 2.0kb upstream 2.0kb upstream 4083 true Chr3: 17521458-17525540 Arabidopsis thaliana
AT3G47550 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17521458-17523457 Arabidopsis thaliana
AT3G47550 2.0kb downstream 2.0kb downstream 4083 true Chr3: 17523458-17527540 Arabidopsis thaliana
AT3G47550 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17525541-17527540 Arabidopsis thaliana
AT3G47550 5.0kb upstream 5.0kb upstream 7083 true Chr3: 17518458-17525540 Arabidopsis thaliana
AT3G47550 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17518458-17523457 Arabidopsis thaliana
AT3G47550 5.0kb downstream 5.0kb downstream 7083 true Chr3: 17523458-17530540 Arabidopsis thaliana
AT3G47550 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17525541-17530540 Arabidopsis thaliana
AT3G47550 10.0kb upstream 10.0kb upstream 12083 true Chr3: 17513458-17525540 Arabidopsis thaliana
AT3G47550 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17513458-17523457 Arabidopsis thaliana
AT3G47550 10.0kb downstream 10.0kb downstream 12083 true Chr3: 17523458-17535540 Arabidopsis thaliana
AT3G47550 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17525541-17535540 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367185 5261 Brassicaceae View MSA
123839450 5264 Brassicales-Malvales View MSA
124340031 5266 SBM View MSA
124251215 5268 Malvidae View MSA
124070525 5270 Rosid View MSA
123751414 5271 Pentapetalae View MSA
122787187 5272 Eudicot View MSA
122048569 5273 Angiosperm View MSA
121311024 5274 Embryophyte View MSA
123428817 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.165        
cufflinks 6.193        
cufflinks 4.737       Low
cufflinks 6.04        
cufflinks 6.003        
cufflinks 5.821        

0 Strain