Gene : AT3G47370 A. thaliana TAIR10
Defline:  (1 of 3) K02969 - small subunit ribosomal protein S20e (RP-S20e, RPS20) Genomic Order:  3720
Name:  ? AT3G47370 Secondary Identifier:  ? PAC:19664061
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G47370 0.5kb upstream 0.5kb upstream 1744 true Chr3: 17453478-17455221 Arabidopsis thaliana
AT3G47370 0.5kb upstream 0.5kb upstream 500 false Chr3: 17454722-17455221 Arabidopsis thaliana
AT3G47370 0.5kb downstream 0.5kb downstream 1744 true Chr3: 17452978-17454721 Arabidopsis thaliana
AT3G47370 0.5kb downstream 0.5kb downstream 500 false Chr3: 17452978-17453477 Arabidopsis thaliana
AT3G47370 1.0kb upstream 1.0kb upstream 2244 true Chr3: 17453478-17455721 Arabidopsis thaliana
AT3G47370 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17454722-17455721 Arabidopsis thaliana
AT3G47370 1.0kb downstream 1.0kb downstream 2244 true Chr3: 17452478-17454721 Arabidopsis thaliana
AT3G47370 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17452478-17453477 Arabidopsis thaliana
AT3G47370 2.0kb upstream 2.0kb upstream 3244 true Chr3: 17453478-17456721 Arabidopsis thaliana
AT3G47370 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17454722-17456721 Arabidopsis thaliana
AT3G47370 2.0kb downstream 2.0kb downstream 3244 true Chr3: 17451478-17454721 Arabidopsis thaliana
AT3G47370 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17451478-17453477 Arabidopsis thaliana
AT3G47370 5.0kb upstream 5.0kb upstream 6244 true Chr3: 17453478-17459721 Arabidopsis thaliana
AT3G47370 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17454722-17459721 Arabidopsis thaliana
AT3G47370 5.0kb downstream 5.0kb downstream 6244 true Chr3: 17448478-17454721 Arabidopsis thaliana
AT3G47370 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17448478-17453477 Arabidopsis thaliana
AT3G47370 10.0kb upstream 10.0kb upstream 11244 true Chr3: 17453478-17464721 Arabidopsis thaliana
AT3G47370 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17454722-17464721 Arabidopsis thaliana
AT3G47370 10.0kb downstream 10.0kb downstream 11244 true Chr3: 17443478-17454721 Arabidopsis thaliana
AT3G47370 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17443478-17453477 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362485 5261 Brassicaceae View MSA
123837493 5264 Brassicales-Malvales View MSA
124350721 5266 SBM View MSA
124251752 5268 Malvidae View MSA
124068920 5270 Rosid View MSA
123743222 5271 Pentapetalae View MSA
122791885 5272 Eudicot View MSA
122044190 5273 Angiosperm View MSA
121349858 5274 Embryophyte View MSA
123426171 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.121        
cufflinks 26.546        
cufflinks 17.732        
cufflinks 26.653        
cufflinks 13.402       Low
cufflinks 31.81     High High

0 Strain