Gene : CDF3 A. thaliana TAIR10
Primary Identifier:  ? AT3G47500 Defline:  (1 of 4) PTHR31089:SF4 - CYCLIC DOF FACTOR 2-RELATED
Genomic Order:  3733 Name:  ? AT3G47500
Secondary Identifier:  ? PAC:19661758
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G47500 0.5kb upstream 0.5kb upstream 2559 true Chr3: 17504000-17506558 Arabidopsis thaliana
AT3G47500 0.5kb upstream 0.5kb upstream 500 false Chr3: 17506059-17506558 Arabidopsis thaliana
AT3G47500 0.5kb downstream 0.5kb downstream 2559 true Chr3: 17503500-17506058 Arabidopsis thaliana
AT3G47500 0.5kb downstream 0.5kb downstream 500 false Chr3: 17503500-17503999 Arabidopsis thaliana
AT3G47500 1.0kb upstream 1.0kb upstream 3059 true Chr3: 17504000-17507058 Arabidopsis thaliana
AT3G47500 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17506059-17507058 Arabidopsis thaliana
AT3G47500 1.0kb downstream 1.0kb downstream 3059 true Chr3: 17503000-17506058 Arabidopsis thaliana
AT3G47500 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17503000-17503999 Arabidopsis thaliana
AT3G47500 2.0kb upstream 2.0kb upstream 4059 true Chr3: 17504000-17508058 Arabidopsis thaliana
AT3G47500 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17506059-17508058 Arabidopsis thaliana
AT3G47500 2.0kb downstream 2.0kb downstream 4059 true Chr3: 17502000-17506058 Arabidopsis thaliana
AT3G47500 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17502000-17503999 Arabidopsis thaliana
AT3G47500 5.0kb upstream 5.0kb upstream 7059 true Chr3: 17504000-17511058 Arabidopsis thaliana
AT3G47500 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17506059-17511058 Arabidopsis thaliana
AT3G47500 5.0kb downstream 5.0kb downstream 7059 true Chr3: 17499000-17506058 Arabidopsis thaliana
AT3G47500 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17499000-17503999 Arabidopsis thaliana
AT3G47500 10.0kb upstream 10.0kb upstream 12059 true Chr3: 17504000-17516058 Arabidopsis thaliana
AT3G47500 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17506059-17516058 Arabidopsis thaliana
AT3G47500 10.0kb downstream 10.0kb downstream 12059 true Chr3: 17494000-17506058 Arabidopsis thaliana
AT3G47500 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17494000-17503999 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370902 5261 Brassicaceae View MSA
123836423 5264 Brassicales-Malvales View MSA
124338781 5266 SBM View MSA
124246503 5268 Malvidae View MSA
124066324 5270 Rosid View MSA
123751425 5271 Pentapetalae View MSA
122791287 5272 Eudicot View MSA
122048139 5273 Angiosperm View MSA
121349903 5274 Embryophyte View MSA
123427226 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.748       Low
cufflinks 6.964        
cufflinks 4.67        
cufflinks 9.356       High
cufflinks 6.865        
cufflinks 2.776       Low

0 Strain