Gene : AT3G46960 A. thaliana TAIR10
Defline:  (1 of 1) K12599 - antiviral helicase SKI2 (SKI2, SKIV2L) Genomic Order:  3685
Name:  ? AT3G46960 Secondary Identifier:  ? PAC:19662336
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G46960 0.5kb upstream 0.5kb upstream 7695 true Chr3: 17290873-17298567 Arabidopsis thaliana
AT3G46960 0.5kb upstream 0.5kb upstream 500 false Chr3: 17298068-17298567 Arabidopsis thaliana
AT3G46960 0.5kb downstream 0.5kb downstream 7695 true Chr3: 17290373-17298067 Arabidopsis thaliana
AT3G46960 0.5kb downstream 0.5kb downstream 500 false Chr3: 17290373-17290872 Arabidopsis thaliana
AT3G46960 1.0kb upstream 1.0kb upstream 8195 true Chr3: 17290873-17299067 Arabidopsis thaliana
AT3G46960 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17298068-17299067 Arabidopsis thaliana
AT3G46960 1.0kb downstream 1.0kb downstream 8195 true Chr3: 17289873-17298067 Arabidopsis thaliana
AT3G46960 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17289873-17290872 Arabidopsis thaliana
AT3G46960 2.0kb upstream 2.0kb upstream 9195 true Chr3: 17290873-17300067 Arabidopsis thaliana
AT3G46960 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17298068-17300067 Arabidopsis thaliana
AT3G46960 2.0kb downstream 2.0kb downstream 9195 true Chr3: 17288873-17298067 Arabidopsis thaliana
AT3G46960 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17288873-17290872 Arabidopsis thaliana
AT3G46960 5.0kb upstream 5.0kb upstream 12195 true Chr3: 17290873-17303067 Arabidopsis thaliana
AT3G46960 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17298068-17303067 Arabidopsis thaliana
AT3G46960 5.0kb downstream 5.0kb downstream 12195 true Chr3: 17285873-17298067 Arabidopsis thaliana
AT3G46960 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17285873-17290872 Arabidopsis thaliana
AT3G46960 10.0kb upstream 10.0kb upstream 17195 true Chr3: 17290873-17308067 Arabidopsis thaliana
AT3G46960 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17298068-17308067 Arabidopsis thaliana
AT3G46960 10.0kb downstream 10.0kb downstream 17195 true Chr3: 17280873-17298067 Arabidopsis thaliana
AT3G46960 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17280873-17290872 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361239 5261 Brassicaceae View MSA
123833402 5264 Brassicales-Malvales View MSA
124337825 5266 SBM View MSA
124238521 5268 Malvidae View MSA
124064775 5270 Rosid View MSA
123739917 5271 Pentapetalae View MSA
122788898 5272 Eudicot View MSA
122042140 5273 Angiosperm View MSA
121344115 5274 Embryophyte View MSA
123424218 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.232        
cufflinks 9.272       High
cufflinks 5.243        
cufflinks 8.712        
cufflinks 5.293        
cufflinks 8.096        

0 Strain