Gene : AT3G46600 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31636:SF46 - SCARECROW-LIKE PROTEIN 11-RELATED Genomic Order:  3644
Name:  ? AT3G46600 Secondary Identifier:  ? PAC:19658809
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G46600 0.5kb upstream 0.5kb upstream 2542 true Chr3: 17157424-17159965 Arabidopsis thaliana
AT3G46600 0.5kb upstream 0.5kb upstream 500 false Chr3: 17157424-17157923 Arabidopsis thaliana
AT3G46600 0.5kb downstream 0.5kb downstream 2542 true Chr3: 17157924-17160465 Arabidopsis thaliana
AT3G46600 0.5kb downstream 0.5kb downstream 500 false Chr3: 17159966-17160465 Arabidopsis thaliana
AT3G46600 1.0kb upstream 1.0kb upstream 3042 true Chr3: 17156924-17159965 Arabidopsis thaliana
AT3G46600 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17156924-17157923 Arabidopsis thaliana
AT3G46600 1.0kb downstream 1.0kb downstream 3042 true Chr3: 17157924-17160965 Arabidopsis thaliana
AT3G46600 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17159966-17160965 Arabidopsis thaliana
AT3G46600 2.0kb upstream 2.0kb upstream 4042 true Chr3: 17155924-17159965 Arabidopsis thaliana
AT3G46600 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17155924-17157923 Arabidopsis thaliana
AT3G46600 2.0kb downstream 2.0kb downstream 4042 true Chr3: 17157924-17161965 Arabidopsis thaliana
AT3G46600 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17159966-17161965 Arabidopsis thaliana
AT3G46600 5.0kb upstream 5.0kb upstream 7042 true Chr3: 17152924-17159965 Arabidopsis thaliana
AT3G46600 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17152924-17157923 Arabidopsis thaliana
AT3G46600 5.0kb downstream 5.0kb downstream 7042 true Chr3: 17157924-17164965 Arabidopsis thaliana
AT3G46600 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17159966-17164965 Arabidopsis thaliana
AT3G46600 10.0kb upstream 10.0kb upstream 12042 true Chr3: 17147924-17159965 Arabidopsis thaliana
AT3G46600 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17147924-17157923 Arabidopsis thaliana
AT3G46600 10.0kb downstream 10.0kb downstream 12042 true Chr3: 17157924-17169965 Arabidopsis thaliana
AT3G46600 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17159966-17169965 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122030269 5273 Angiosperm View MSA
122371779 5261 Brassicaceae View MSA
123800231 5264 Brassicales-Malvales View MSA
124351413 5266 SBM View MSA
124248158 5268 Malvidae View MSA
124070691 5270 Rosid View MSA
123752747 5271 Pentapetalae View MSA
122774765 5272 Eudicot View MSA
121350999 5274 Embryophyte View MSA
123381964 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.715       Low
cufflinks 23.37        
cufflinks 29.705     High High
cufflinks 27.238        
cufflinks 27.842     High  
cufflinks 21.316        

0 Strain