Gene : AT3G46220 A. thaliana TAIR10
Defline:  (1 of 1) PTHR31057:SF0 - E3 UFM1-PROTEIN LIGASE 1 Genomic Order:  3607
Name:  ? AT3G46220 Secondary Identifier:  ? PAC:19658699
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G46220 0.5kb upstream 0.5kb upstream 5630 true Chr3: 16978548-16984177 Arabidopsis thaliana
AT3G46220 0.5kb upstream 0.5kb upstream 500 false Chr3: 16978548-16979047 Arabidopsis thaliana
AT3G46220 0.5kb downstream 0.5kb downstream 5630 true Chr3: 16979048-16984677 Arabidopsis thaliana
AT3G46220 0.5kb downstream 0.5kb downstream 500 false Chr3: 16984178-16984677 Arabidopsis thaliana
AT3G46220 1.0kb upstream 1.0kb upstream 6130 true Chr3: 16978048-16984177 Arabidopsis thaliana
AT3G46220 1.0kb upstream 1.0kb upstream 1000 false Chr3: 16978048-16979047 Arabidopsis thaliana
AT3G46220 1.0kb downstream 1.0kb downstream 6130 true Chr3: 16979048-16985177 Arabidopsis thaliana
AT3G46220 1.0kb downstream 1.0kb downstream 1000 false Chr3: 16984178-16985177 Arabidopsis thaliana
AT3G46220 2.0kb upstream 2.0kb upstream 7130 true Chr3: 16977048-16984177 Arabidopsis thaliana
AT3G46220 2.0kb upstream 2.0kb upstream 2000 false Chr3: 16977048-16979047 Arabidopsis thaliana
AT3G46220 2.0kb downstream 2.0kb downstream 7130 true Chr3: 16979048-16986177 Arabidopsis thaliana
AT3G46220 2.0kb downstream 2.0kb downstream 2000 false Chr3: 16984178-16986177 Arabidopsis thaliana
AT3G46220 5.0kb upstream 5.0kb upstream 10130 true Chr3: 16974048-16984177 Arabidopsis thaliana
AT3G46220 5.0kb upstream 5.0kb upstream 5000 false Chr3: 16974048-16979047 Arabidopsis thaliana
AT3G46220 5.0kb downstream 5.0kb downstream 10130 true Chr3: 16979048-16989177 Arabidopsis thaliana
AT3G46220 5.0kb downstream 5.0kb downstream 5000 false Chr3: 16984178-16989177 Arabidopsis thaliana
AT3G46220 10.0kb upstream 10.0kb upstream 15130 true Chr3: 16969048-16984177 Arabidopsis thaliana
AT3G46220 10.0kb upstream 10.0kb upstream 10000 false Chr3: 16969048-16979047 Arabidopsis thaliana
AT3G46220 10.0kb downstream 10.0kb downstream 15130 true Chr3: 16979048-16994177 Arabidopsis thaliana
AT3G46220 10.0kb downstream 10.0kb downstream 10000 false Chr3: 16984178-16994177 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026361 5273 Angiosperm View MSA
122361519 5261 Brassicaceae View MSA
123834295 5264 Brassicales-Malvales View MSA
124342202 5266 SBM View MSA
124238478 5268 Malvidae View MSA
124064976 5270 Rosid View MSA
123747410 5271 Pentapetalae View MSA
122787420 5272 Eudicot View MSA
121346113 5274 Embryophyte View MSA
123424330 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.855        
cufflinks 2.376        
cufflinks 1.553       Low
cufflinks 2.651       High
cufflinks 1.901        
cufflinks 2.379        

0 Strain