Gene : HERK1 A. thaliana TAIR10
Primary Identifier:  ? AT3G46290 Defline:  (1 of 2) PTHR27003:SF94 - RECEPTOR-LIKE PROTEIN KINASE HERK 1
Genomic Order:  3613 Name:  ? AT3G46290
Secondary Identifier:  ? PAC:19661098
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G46290 0.5kb upstream 0.5kb upstream 3658 true Chr3: 17012228-17015885 Arabidopsis thaliana
AT3G46290 0.5kb upstream 0.5kb upstream 500 false Chr3: 17012228-17012727 Arabidopsis thaliana
AT3G46290 0.5kb downstream 0.5kb downstream 3658 true Chr3: 17012728-17016385 Arabidopsis thaliana
AT3G46290 0.5kb downstream 0.5kb downstream 500 false Chr3: 17015886-17016385 Arabidopsis thaliana
AT3G46290 1.0kb upstream 1.0kb upstream 4158 true Chr3: 17011728-17015885 Arabidopsis thaliana
AT3G46290 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17011728-17012727 Arabidopsis thaliana
AT3G46290 1.0kb downstream 1.0kb downstream 4158 true Chr3: 17012728-17016885 Arabidopsis thaliana
AT3G46290 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17015886-17016885 Arabidopsis thaliana
AT3G46290 2.0kb upstream 2.0kb upstream 5158 true Chr3: 17010728-17015885 Arabidopsis thaliana
AT3G46290 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17010728-17012727 Arabidopsis thaliana
AT3G46290 2.0kb downstream 2.0kb downstream 5158 true Chr3: 17012728-17017885 Arabidopsis thaliana
AT3G46290 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17015886-17017885 Arabidopsis thaliana
AT3G46290 5.0kb upstream 5.0kb upstream 8158 true Chr3: 17007728-17015885 Arabidopsis thaliana
AT3G46290 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17007728-17012727 Arabidopsis thaliana
AT3G46290 5.0kb downstream 5.0kb downstream 8158 true Chr3: 17012728-17020885 Arabidopsis thaliana
AT3G46290 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17015886-17020885 Arabidopsis thaliana
AT3G46290 10.0kb upstream 10.0kb upstream 13158 true Chr3: 17002728-17015885 Arabidopsis thaliana
AT3G46290 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17002728-17012727 Arabidopsis thaliana
AT3G46290 10.0kb downstream 10.0kb downstream 13158 true Chr3: 17012728-17025885 Arabidopsis thaliana
AT3G46290 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17015886-17025885 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376471 5261 Brassicaceae View MSA
123837762 5264 Brassicales-Malvales View MSA
124345538 5266 SBM View MSA
124246443 5268 Malvidae View MSA
124074134 5270 Rosid View MSA
123748316 5271 Pentapetalae View MSA
122789518 5272 Eudicot View MSA
122044350 5273 Angiosperm View MSA
121310282 5274 Embryophyte View MSA
123347811 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.871        
cufflinks 20.921        
cufflinks 15.492       Low
cufflinks 21.27        
cufflinks 16.619        
cufflinks 22.091        

0 Strain