Gene : OFP18 A. thaliana TAIR10
Primary Identifier:  ? AT3G52540 Defline:  (1 of 2) PTHR33057:SF33 - EXPRESSED PROTEIN-RELATED
Genomic Order:  4281 Name:  ? AT3G52540
Secondary Identifier:  ? PAC:19663721
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G52540 0.5kb upstream 0.5kb upstream 1805 true Chr3: 19488546-19490350 Arabidopsis thaliana
AT3G52540 0.5kb upstream 0.5kb upstream 500 false Chr3: 19489851-19490350 Arabidopsis thaliana
AT3G52540 0.5kb downstream 0.5kb downstream 1805 true Chr3: 19488046-19489850 Arabidopsis thaliana
AT3G52540 0.5kb downstream 0.5kb downstream 500 false Chr3: 19488046-19488545 Arabidopsis thaliana
AT3G52540 1.0kb upstream 1.0kb upstream 2305 true Chr3: 19488546-19490850 Arabidopsis thaliana
AT3G52540 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19489851-19490850 Arabidopsis thaliana
AT3G52540 1.0kb downstream 1.0kb downstream 2305 true Chr3: 19487546-19489850 Arabidopsis thaliana
AT3G52540 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19487546-19488545 Arabidopsis thaliana
AT3G52540 2.0kb upstream 2.0kb upstream 3305 true Chr3: 19488546-19491850 Arabidopsis thaliana
AT3G52540 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19489851-19491850 Arabidopsis thaliana
AT3G52540 2.0kb downstream 2.0kb downstream 3305 true Chr3: 19486546-19489850 Arabidopsis thaliana
AT3G52540 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19486546-19488545 Arabidopsis thaliana
AT3G52540 5.0kb upstream 5.0kb upstream 6305 true Chr3: 19488546-19494850 Arabidopsis thaliana
AT3G52540 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19489851-19494850 Arabidopsis thaliana
AT3G52540 5.0kb downstream 5.0kb downstream 6305 true Chr3: 19483546-19489850 Arabidopsis thaliana
AT3G52540 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19483546-19488545 Arabidopsis thaliana
AT3G52540 10.0kb upstream 10.0kb upstream 11305 true Chr3: 19488546-19499850 Arabidopsis thaliana
AT3G52540 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19489851-19499850 Arabidopsis thaliana
AT3G52540 10.0kb downstream 10.0kb downstream 11305 true Chr3: 19478546-19489850 Arabidopsis thaliana
AT3G52540 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19478546-19488545 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376765 5261 Brassicaceae View MSA
123801352 5264 Brassicales-Malvales View MSA
124351307 5266 SBM View MSA
124253627 5268 Malvidae View MSA
124071458 5270 Rosid View MSA
123749654 5271 Pentapetalae View MSA
122787439 5272 Eudicot View MSA
122050214 5273 Angiosperm View MSA
121311801 5274 Embryophyte View MSA
123349046 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.954       High
cufflinks 0.035     Low Low
cufflinks 0.374        
cufflinks 0.2     Low  
cufflinks 0.637        
cufflinks 0.024     Low Low

0 Strain