Gene : AT3G16220 A. thaliana TAIR10
Defline:  (1 of 2) PTHR13360//PTHR13360:SF1 - FAMILY NOT NAMED // ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 1 Genomic Order:  1664
Name:  ? AT3G16220 Secondary Identifier:  ? PAC:19658491
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G16220 0.5kb upstream 0.5kb upstream 2139 true Chr3: 5497097-5499235 Arabidopsis thaliana
AT3G16220 0.5kb upstream 0.5kb upstream 500 false Chr3: 5497097-5497596 Arabidopsis thaliana
AT3G16220 0.5kb downstream 0.5kb downstream 2139 true Chr3: 5497597-5499735 Arabidopsis thaliana
AT3G16220 0.5kb downstream 0.5kb downstream 500 false Chr3: 5499236-5499735 Arabidopsis thaliana
AT3G16220 1.0kb upstream 1.0kb upstream 2639 true Chr3: 5496597-5499235 Arabidopsis thaliana
AT3G16220 1.0kb upstream 1.0kb upstream 1000 false Chr3: 5496597-5497596 Arabidopsis thaliana
AT3G16220 1.0kb downstream 1.0kb downstream 2639 true Chr3: 5497597-5500235 Arabidopsis thaliana
AT3G16220 1.0kb downstream 1.0kb downstream 1000 false Chr3: 5499236-5500235 Arabidopsis thaliana
AT3G16220 2.0kb upstream 2.0kb upstream 3639 true Chr3: 5495597-5499235 Arabidopsis thaliana
AT3G16220 2.0kb upstream 2.0kb upstream 2000 false Chr3: 5495597-5497596 Arabidopsis thaliana
AT3G16220 2.0kb downstream 2.0kb downstream 3639 true Chr3: 5497597-5501235 Arabidopsis thaliana
AT3G16220 2.0kb downstream 2.0kb downstream 2000 false Chr3: 5499236-5501235 Arabidopsis thaliana
AT3G16220 5.0kb upstream 5.0kb upstream 6639 true Chr3: 5492597-5499235 Arabidopsis thaliana
AT3G16220 5.0kb upstream 5.0kb upstream 5000 false Chr3: 5492597-5497596 Arabidopsis thaliana
AT3G16220 5.0kb downstream 5.0kb downstream 6639 true Chr3: 5497597-5504235 Arabidopsis thaliana
AT3G16220 5.0kb downstream 5.0kb downstream 5000 false Chr3: 5499236-5504235 Arabidopsis thaliana
AT3G16220 10.0kb upstream 10.0kb upstream 11639 true Chr3: 5487597-5499235 Arabidopsis thaliana
AT3G16220 10.0kb upstream 10.0kb upstream 10000 false Chr3: 5487597-5497596 Arabidopsis thaliana
AT3G16220 10.0kb downstream 10.0kb downstream 11639 true Chr3: 5497597-5509235 Arabidopsis thaliana
AT3G16220 10.0kb downstream 10.0kb downstream 10000 false Chr3: 5499236-5509235 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369421 5261 Brassicaceae View MSA
123799774 5264 Brassicales-Malvales View MSA
124297261 5266 SBM View MSA
124241823 5268 Malvidae View MSA
123951935 5270 Rosid View MSA
123743907 5271 Pentapetalae View MSA
122770812 5272 Eudicot View MSA
122047924 5273 Angiosperm View MSA
121310815 5274 Embryophyte View MSA
123426629 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.085        
cufflinks 3.986        
cufflinks 19.424        
cufflinks 4.478        
cufflinks 20.675        
cufflinks 2.409       Low

0 Strain