Gene : MYB5 A. thaliana TAIR10
Primary Identifier:  ? AT3G13540 Defline:  (1 of 1) PTHR10641//PTHR10641:SF455 - MYB-LIKE DNA-BINDING PROTEIN MYB // SUBFAMILY NOT NAMED
Genomic Order:  1356 Name:  ? AT3G13540
Secondary Identifier:  ? PAC:19663000
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G13540 0.5kb upstream 0.5kb upstream 2029 true Chr3: 4419673-4421701 Arabidopsis thaliana
AT3G13540 0.5kb upstream 0.5kb upstream 500 false Chr3: 4419673-4420172 Arabidopsis thaliana
AT3G13540 0.5kb downstream 0.5kb downstream 2029 true Chr3: 4420173-4422201 Arabidopsis thaliana
AT3G13540 0.5kb downstream 0.5kb downstream 500 false Chr3: 4421702-4422201 Arabidopsis thaliana
AT3G13540 1.0kb upstream 1.0kb upstream 2529 true Chr3: 4419173-4421701 Arabidopsis thaliana
AT3G13540 1.0kb upstream 1.0kb upstream 1000 false Chr3: 4419173-4420172 Arabidopsis thaliana
AT3G13540 1.0kb downstream 1.0kb downstream 2529 true Chr3: 4420173-4422701 Arabidopsis thaliana
AT3G13540 1.0kb downstream 1.0kb downstream 1000 false Chr3: 4421702-4422701 Arabidopsis thaliana
AT3G13540 2.0kb upstream 2.0kb upstream 3529 true Chr3: 4418173-4421701 Arabidopsis thaliana
AT3G13540 2.0kb upstream 2.0kb upstream 2000 false Chr3: 4418173-4420172 Arabidopsis thaliana
AT3G13540 2.0kb downstream 2.0kb downstream 3529 true Chr3: 4420173-4423701 Arabidopsis thaliana
AT3G13540 2.0kb downstream 2.0kb downstream 2000 false Chr3: 4421702-4423701 Arabidopsis thaliana
AT3G13540 5.0kb upstream 5.0kb upstream 6529 true Chr3: 4415173-4421701 Arabidopsis thaliana
AT3G13540 5.0kb upstream 5.0kb upstream 5000 false Chr3: 4415173-4420172 Arabidopsis thaliana
AT3G13540 5.0kb downstream 5.0kb downstream 6529 true Chr3: 4420173-4426701 Arabidopsis thaliana
AT3G13540 5.0kb downstream 5.0kb downstream 5000 false Chr3: 4421702-4426701 Arabidopsis thaliana
AT3G13540 10.0kb upstream 10.0kb upstream 11529 true Chr3: 4410173-4421701 Arabidopsis thaliana
AT3G13540 10.0kb upstream 10.0kb upstream 10000 false Chr3: 4410173-4420172 Arabidopsis thaliana
AT3G13540 10.0kb downstream 10.0kb downstream 11529 true Chr3: 4420173-4431701 Arabidopsis thaliana
AT3G13540 10.0kb downstream 10.0kb downstream 10000 false Chr3: 4421702-4431701 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378625 5261 Brassicaceae View MSA
123835031 5264 Brassicales-Malvales View MSA
124351070 5266 SBM View MSA
124243976 5268 Malvidae View MSA
124071860 5270 Rosid View MSA
123753736 5271 Pentapetalae View MSA
122796974 5272 Eudicot View MSA
122049924 5273 Angiosperm View MSA
123429079 5275 Viridiplantae View MSA
121351179 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.858        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.298        
cufflinks 0.02     Low Low
cufflinks 0.468        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain