Gene : AT3G19630 A. thaliana TAIR10
Defline:  (1 of 1) PTHR30544//PTHR30544:SF2 - 23S RRNA METHYLTRANSFERASE // SUBFAMILY NOT NAMED Genomic Order:  2040
Name:  ? AT3G19630 Secondary Identifier:  ? PAC:19660854
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G19630 0.5kb upstream 0.5kb upstream 2857 true Chr3: 6818387-6821243 Arabidopsis thaliana
AT3G19630 0.5kb upstream 0.5kb upstream 500 false Chr3: 6820744-6821243 Arabidopsis thaliana
AT3G19630 0.5kb downstream 0.5kb downstream 2857 true Chr3: 6817887-6820743 Arabidopsis thaliana
AT3G19630 0.5kb downstream 0.5kb downstream 500 false Chr3: 6817887-6818386 Arabidopsis thaliana
AT3G19630 1.0kb upstream 1.0kb upstream 3357 true Chr3: 6818387-6821743 Arabidopsis thaliana
AT3G19630 1.0kb upstream 1.0kb upstream 1000 false Chr3: 6820744-6821743 Arabidopsis thaliana
AT3G19630 1.0kb downstream 1.0kb downstream 3357 true Chr3: 6817387-6820743 Arabidopsis thaliana
AT3G19630 1.0kb downstream 1.0kb downstream 1000 false Chr3: 6817387-6818386 Arabidopsis thaliana
AT3G19630 2.0kb upstream 2.0kb upstream 4357 true Chr3: 6818387-6822743 Arabidopsis thaliana
AT3G19630 2.0kb upstream 2.0kb upstream 2000 false Chr3: 6820744-6822743 Arabidopsis thaliana
AT3G19630 2.0kb downstream 2.0kb downstream 4357 true Chr3: 6816387-6820743 Arabidopsis thaliana
AT3G19630 2.0kb downstream 2.0kb downstream 2000 false Chr3: 6816387-6818386 Arabidopsis thaliana
AT3G19630 5.0kb upstream 5.0kb upstream 7357 true Chr3: 6818387-6825743 Arabidopsis thaliana
AT3G19630 5.0kb upstream 5.0kb upstream 5000 false Chr3: 6820744-6825743 Arabidopsis thaliana
AT3G19630 5.0kb downstream 5.0kb downstream 7357 true Chr3: 6813387-6820743 Arabidopsis thaliana
AT3G19630 5.0kb downstream 5.0kb downstream 5000 false Chr3: 6813387-6818386 Arabidopsis thaliana
AT3G19630 10.0kb upstream 10.0kb upstream 12357 true Chr3: 6818387-6830743 Arabidopsis thaliana
AT3G19630 10.0kb upstream 10.0kb upstream 10000 false Chr3: 6820744-6830743 Arabidopsis thaliana
AT3G19630 10.0kb downstream 10.0kb downstream 12357 true Chr3: 6808387-6820743 Arabidopsis thaliana
AT3G19630 10.0kb downstream 10.0kb downstream 10000 false Chr3: 6808387-6818386 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361810 5261 Brassicaceae View MSA
123829469 5264 Brassicales-Malvales View MSA
124346141 5266 SBM View MSA
124239215 5268 Malvidae View MSA
124068873 5270 Rosid View MSA
123737735 5271 Pentapetalae View MSA
122788749 5272 Eudicot View MSA
122042435 5273 Angiosperm View MSA
123429187 5275 Viridiplantae View MSA
121346752 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.31        
cufflinks 10.493       High
cufflinks 7.558       Low
cufflinks 11.013       High
cufflinks 8.571        
cufflinks 8.992        

0 Strain