Gene : AT3G19440 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11079:SF58 - RNA PSEUDOURIDINE SYNTHASE 4, MITOCHONDRIAL Genomic Order:  2016
Name:  ? AT3G19440 Secondary Identifier:  ? PAC:19662566
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G19440 0.5kb upstream 0.5kb upstream 3059 true Chr3: 6740195-6743253 Arabidopsis thaliana
AT3G19440 0.5kb upstream 0.5kb upstream 500 false Chr3: 6740195-6740694 Arabidopsis thaliana
AT3G19440 0.5kb downstream 0.5kb downstream 3059 true Chr3: 6740695-6743753 Arabidopsis thaliana
AT3G19440 0.5kb downstream 0.5kb downstream 500 false Chr3: 6743254-6743753 Arabidopsis thaliana
AT3G19440 1.0kb upstream 1.0kb upstream 3559 true Chr3: 6739695-6743253 Arabidopsis thaliana
AT3G19440 1.0kb upstream 1.0kb upstream 1000 false Chr3: 6739695-6740694 Arabidopsis thaliana
AT3G19440 1.0kb downstream 1.0kb downstream 3559 true Chr3: 6740695-6744253 Arabidopsis thaliana
AT3G19440 1.0kb downstream 1.0kb downstream 1000 false Chr3: 6743254-6744253 Arabidopsis thaliana
AT3G19440 2.0kb upstream 2.0kb upstream 4559 true Chr3: 6738695-6743253 Arabidopsis thaliana
AT3G19440 2.0kb upstream 2.0kb upstream 2000 false Chr3: 6738695-6740694 Arabidopsis thaliana
AT3G19440 2.0kb downstream 2.0kb downstream 4559 true Chr3: 6740695-6745253 Arabidopsis thaliana
AT3G19440 2.0kb downstream 2.0kb downstream 2000 false Chr3: 6743254-6745253 Arabidopsis thaliana
AT3G19440 5.0kb upstream 5.0kb upstream 7559 true Chr3: 6735695-6743253 Arabidopsis thaliana
AT3G19440 5.0kb upstream 5.0kb upstream 5000 false Chr3: 6735695-6740694 Arabidopsis thaliana
AT3G19440 5.0kb downstream 5.0kb downstream 7559 true Chr3: 6740695-6748253 Arabidopsis thaliana
AT3G19440 5.0kb downstream 5.0kb downstream 5000 false Chr3: 6743254-6748253 Arabidopsis thaliana
AT3G19440 10.0kb upstream 10.0kb upstream 12559 true Chr3: 6730695-6743253 Arabidopsis thaliana
AT3G19440 10.0kb upstream 10.0kb upstream 10000 false Chr3: 6730695-6740694 Arabidopsis thaliana
AT3G19440 10.0kb downstream 10.0kb downstream 12559 true Chr3: 6740695-6753253 Arabidopsis thaliana
AT3G19440 10.0kb downstream 10.0kb downstream 10000 false Chr3: 6743254-6753253 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366754 5261 Brassicaceae View MSA
123830900 5264 Brassicales-Malvales View MSA
124338997 5266 SBM View MSA
124240525 5268 Malvidae View MSA
124062896 5270 Rosid View MSA
123739402 5271 Pentapetalae View MSA
122789155 5272 Eudicot View MSA
122044884 5273 Angiosperm View MSA
121348863 5274 Embryophyte View MSA
123426669 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.298        
cufflinks 3.837        
cufflinks 1.608        
cufflinks 4.05        
cufflinks 1.183       Low
cufflinks 4.686       High

0 Strain