Gene : MAP1B A. thaliana TAIR10
Primary Identifier:  ? AT3G25740 Defline:  (1 of 2) PTHR10804:SF68 - METHIONINE AMINOPEPTIDASE 1B, CHLOROPLASTIC
Genomic Order:  2706 Name:  ? AT3G25740
Secondary Identifier:  ? PAC:19660435
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G25740 0.5kb upstream 0.5kb upstream 2477 true Chr3: 9397286-9399762 Arabidopsis thaliana
AT3G25740 0.5kb upstream 0.5kb upstream 500 false Chr3: 9397286-9397785 Arabidopsis thaliana
AT3G25740 0.5kb downstream 0.5kb downstream 2477 true Chr3: 9397786-9400262 Arabidopsis thaliana
AT3G25740 0.5kb downstream 0.5kb downstream 500 false Chr3: 9399763-9400262 Arabidopsis thaliana
AT3G25740 1.0kb upstream 1.0kb upstream 2977 true Chr3: 9396786-9399762 Arabidopsis thaliana
AT3G25740 1.0kb upstream 1.0kb upstream 1000 false Chr3: 9396786-9397785 Arabidopsis thaliana
AT3G25740 1.0kb downstream 1.0kb downstream 2977 true Chr3: 9397786-9400762 Arabidopsis thaliana
AT3G25740 1.0kb downstream 1.0kb downstream 1000 false Chr3: 9399763-9400762 Arabidopsis thaliana
AT3G25740 2.0kb upstream 2.0kb upstream 3977 true Chr3: 9395786-9399762 Arabidopsis thaliana
AT3G25740 2.0kb upstream 2.0kb upstream 2000 false Chr3: 9395786-9397785 Arabidopsis thaliana
AT3G25740 2.0kb downstream 2.0kb downstream 3977 true Chr3: 9397786-9401762 Arabidopsis thaliana
AT3G25740 2.0kb downstream 2.0kb downstream 2000 false Chr3: 9399763-9401762 Arabidopsis thaliana
AT3G25740 5.0kb upstream 5.0kb upstream 6977 true Chr3: 9392786-9399762 Arabidopsis thaliana
AT3G25740 5.0kb upstream 5.0kb upstream 5000 false Chr3: 9392786-9397785 Arabidopsis thaliana
AT3G25740 5.0kb downstream 5.0kb downstream 6977 true Chr3: 9397786-9404762 Arabidopsis thaliana
AT3G25740 5.0kb downstream 5.0kb downstream 5000 false Chr3: 9399763-9404762 Arabidopsis thaliana
AT3G25740 10.0kb upstream 10.0kb upstream 11977 true Chr3: 9387786-9399762 Arabidopsis thaliana
AT3G25740 10.0kb upstream 10.0kb upstream 10000 false Chr3: 9387786-9397785 Arabidopsis thaliana
AT3G25740 10.0kb downstream 10.0kb downstream 11977 true Chr3: 9397786-9409762 Arabidopsis thaliana
AT3G25740 10.0kb downstream 10.0kb downstream 10000 false Chr3: 9399763-9409762 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375172 5261 Brassicaceae View MSA
123800895 5264 Brassicales-Malvales View MSA
124298255 5266 SBM View MSA
124149943 5268 Malvidae View MSA
123875651 5270 Rosid View MSA
123749440 5271 Pentapetalae View MSA
122791523 5272 Eudicot View MSA
122046775 5273 Angiosperm View MSA
123429177 5275 Viridiplantae View MSA
121348768 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.135        
cufflinks 7.058        
cufflinks 11.408        
cufflinks 8.501        
cufflinks 11.968        
cufflinks 2.939       Low

0 Strain