Gene : AT3G60540 A. thaliana TAIR10
Defline:  (1 of 3) K09481 - protein transport protein SEC61 subunit beta (SEC61B, SBH2) Genomic Order:  5111
Name:  ? AT3G60540 Secondary Identifier:  ? PAC:19663028
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G60540 0.5kb upstream 0.5kb upstream 1403 true Chr3: 22374963-22376365 Arabidopsis thaliana
AT3G60540 0.5kb upstream 0.5kb upstream 500 false Chr3: 22375866-22376365 Arabidopsis thaliana
AT3G60540 0.5kb downstream 0.5kb downstream 1403 true Chr3: 22374463-22375865 Arabidopsis thaliana
AT3G60540 0.5kb downstream 0.5kb downstream 500 false Chr3: 22374463-22374962 Arabidopsis thaliana
AT3G60540 1.0kb upstream 1.0kb upstream 1903 true Chr3: 22374963-22376865 Arabidopsis thaliana
AT3G60540 1.0kb upstream 1.0kb upstream 1000 false Chr3: 22375866-22376865 Arabidopsis thaliana
AT3G60540 1.0kb downstream 1.0kb downstream 1903 true Chr3: 22373963-22375865 Arabidopsis thaliana
AT3G60540 1.0kb downstream 1.0kb downstream 1000 false Chr3: 22373963-22374962 Arabidopsis thaliana
AT3G60540 2.0kb upstream 2.0kb upstream 2903 true Chr3: 22374963-22377865 Arabidopsis thaliana
AT3G60540 2.0kb upstream 2.0kb upstream 2000 false Chr3: 22375866-22377865 Arabidopsis thaliana
AT3G60540 2.0kb downstream 2.0kb downstream 2903 true Chr3: 22372963-22375865 Arabidopsis thaliana
AT3G60540 2.0kb downstream 2.0kb downstream 2000 false Chr3: 22372963-22374962 Arabidopsis thaliana
AT3G60540 5.0kb upstream 5.0kb upstream 5903 true Chr3: 22374963-22380865 Arabidopsis thaliana
AT3G60540 5.0kb upstream 5.0kb upstream 5000 false Chr3: 22375866-22380865 Arabidopsis thaliana
AT3G60540 5.0kb downstream 5.0kb downstream 5903 true Chr3: 22369963-22375865 Arabidopsis thaliana
AT3G60540 5.0kb downstream 5.0kb downstream 5000 false Chr3: 22369963-22374962 Arabidopsis thaliana
AT3G60540 10.0kb upstream 10.0kb upstream 10903 true Chr3: 22374963-22385865 Arabidopsis thaliana
AT3G60540 10.0kb upstream 10.0kb upstream 10000 false Chr3: 22375866-22385865 Arabidopsis thaliana
AT3G60540 10.0kb downstream 10.0kb downstream 10903 true Chr3: 22364963-22375865 Arabidopsis thaliana
AT3G60540 10.0kb downstream 10.0kb downstream 10000 false Chr3: 22364963-22374962 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381328 5261 Brassicaceae View MSA
123837500 5264 Brassicales-Malvales View MSA
124338323 5266 SBM View MSA
124250694 5268 Malvidae View MSA
124074304 5270 Rosid View MSA
123751679 5271 Pentapetalae View MSA
122797593 5272 Eudicot View MSA
122044826 5273 Angiosperm View MSA
121346729 5274 Embryophyte View MSA
123426765 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.608       High
cufflinks 0.16     Low Low
cufflinks 1.322        
cufflinks 0.606        
cufflinks 3.099        
cufflinks 0.284     Low  

0 Strain