Gene : SEN1 A. thaliana TAIR10
Primary Identifier:  ? AT3G45590 Defline:  (1 of 1) 3.1.27.9//4.6.1.16 - Transferred entry: 4.6.1.16 // tRNA-intron lyase / tRNA splicing endonuclease
Genomic Order:  3540 Name:  ? AT3G45590
Secondary Identifier:  ? PAC:19659635
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6689 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G45590 0.5kb upstream 0.5kb upstream 1762 true Chr3: 16732093-16733854 Arabidopsis thaliana
AT3G45590 0.5kb upstream 0.5kb upstream 500 false Chr3: 16732093-16732592 Arabidopsis thaliana
AT3G45590 0.5kb downstream 0.5kb downstream 1762 true Chr3: 16732593-16734354 Arabidopsis thaliana
AT3G45590 0.5kb downstream 0.5kb downstream 500 false Chr3: 16733855-16734354 Arabidopsis thaliana
AT3G45590 1.0kb upstream 1.0kb upstream 2262 true Chr3: 16731593-16733854 Arabidopsis thaliana
AT3G45590 1.0kb upstream 1.0kb upstream 1000 false Chr3: 16731593-16732592 Arabidopsis thaliana
AT3G45590 1.0kb downstream 1.0kb downstream 2262 true Chr3: 16732593-16734854 Arabidopsis thaliana
AT3G45590 1.0kb downstream 1.0kb downstream 1000 false Chr3: 16733855-16734854 Arabidopsis thaliana
AT3G45590 2.0kb upstream 2.0kb upstream 3262 true Chr3: 16730593-16733854 Arabidopsis thaliana
AT3G45590 2.0kb upstream 2.0kb upstream 2000 false Chr3: 16730593-16732592 Arabidopsis thaliana
AT3G45590 2.0kb downstream 2.0kb downstream 3262 true Chr3: 16732593-16735854 Arabidopsis thaliana
AT3G45590 2.0kb downstream 2.0kb downstream 2000 false Chr3: 16733855-16735854 Arabidopsis thaliana
AT3G45590 5.0kb upstream 5.0kb upstream 6262 true Chr3: 16727593-16733854 Arabidopsis thaliana
AT3G45590 5.0kb upstream 5.0kb upstream 5000 false Chr3: 16727593-16732592 Arabidopsis thaliana
AT3G45590 5.0kb downstream 5.0kb downstream 6262 true Chr3: 16732593-16738854 Arabidopsis thaliana
AT3G45590 5.0kb downstream 5.0kb downstream 5000 false Chr3: 16733855-16738854 Arabidopsis thaliana
AT3G45590 10.0kb upstream 10.0kb upstream 11262 true Chr3: 16722593-16733854 Arabidopsis thaliana
AT3G45590 10.0kb upstream 10.0kb upstream 10000 false Chr3: 16722593-16732592 Arabidopsis thaliana
AT3G45590 10.0kb downstream 10.0kb downstream 11262 true Chr3: 16732593-16743854 Arabidopsis thaliana
AT3G45590 10.0kb downstream 10.0kb downstream 10000 false Chr3: 16733855-16743854 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041240 5273 Angiosperm View MSA
122331998 5261 Brassicaceae View MSA
123773118 5264 Brassicales-Malvales View MSA
124346911 5266 SBM View MSA
124240586 5268 Malvidae View MSA
124064519 5270 Rosid View MSA
123739625 5271 Pentapetalae View MSA
122788641 5272 Eudicot View MSA
123429143 5275 Viridiplantae View MSA
121344093 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.907        
cufflinks 1.81        
cufflinks 1.224       Low
cufflinks 1.906        
cufflinks 1.398        
cufflinks 1.779        

0 Strain