Gene : AT3G42860 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11390//PTHR11390:SF25 - PROKARYOTIC DNA TOPOISOMERASE // SUBFAMILY NOT NAMED Genomic Order:  3287
Name:  ? AT3G42860 Secondary Identifier:  ? PAC:19659073
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G42860 0.5kb upstream 0.5kb upstream 2480 true Chr3: 14946188-14948667 Arabidopsis thaliana
AT3G42860 0.5kb upstream 0.5kb upstream 500 false Chr3: 14948168-14948667 Arabidopsis thaliana
AT3G42860 0.5kb downstream 0.5kb downstream 2480 true Chr3: 14945688-14948167 Arabidopsis thaliana
AT3G42860 0.5kb downstream 0.5kb downstream 500 false Chr3: 14945688-14946187 Arabidopsis thaliana
AT3G42860 1.0kb upstream 1.0kb upstream 2980 true Chr3: 14946188-14949167 Arabidopsis thaliana
AT3G42860 1.0kb upstream 1.0kb upstream 1000 false Chr3: 14948168-14949167 Arabidopsis thaliana
AT3G42860 1.0kb downstream 1.0kb downstream 2980 true Chr3: 14945188-14948167 Arabidopsis thaliana
AT3G42860 1.0kb downstream 1.0kb downstream 1000 false Chr3: 14945188-14946187 Arabidopsis thaliana
AT3G42860 2.0kb upstream 2.0kb upstream 3980 true Chr3: 14946188-14950167 Arabidopsis thaliana
AT3G42860 2.0kb upstream 2.0kb upstream 2000 false Chr3: 14948168-14950167 Arabidopsis thaliana
AT3G42860 2.0kb downstream 2.0kb downstream 3980 true Chr3: 14944188-14948167 Arabidopsis thaliana
AT3G42860 2.0kb downstream 2.0kb downstream 2000 false Chr3: 14944188-14946187 Arabidopsis thaliana
AT3G42860 5.0kb upstream 5.0kb upstream 6980 true Chr3: 14946188-14953167 Arabidopsis thaliana
AT3G42860 5.0kb upstream 5.0kb upstream 5000 false Chr3: 14948168-14953167 Arabidopsis thaliana
AT3G42860 5.0kb downstream 5.0kb downstream 6980 true Chr3: 14941188-14948167 Arabidopsis thaliana
AT3G42860 5.0kb downstream 5.0kb downstream 5000 false Chr3: 14941188-14946187 Arabidopsis thaliana
AT3G42860 10.0kb upstream 10.0kb upstream 11980 true Chr3: 14946188-14958167 Arabidopsis thaliana
AT3G42860 10.0kb upstream 10.0kb upstream 10000 false Chr3: 14948168-14958167 Arabidopsis thaliana
AT3G42860 10.0kb downstream 10.0kb downstream 11980 true Chr3: 14936188-14948167 Arabidopsis thaliana
AT3G42860 10.0kb downstream 10.0kb downstream 10000 false Chr3: 14936188-14946187 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026221 5273 Angiosperm View MSA
122381342 5261 Brassicaceae View MSA
123803195 5264 Brassicales-Malvales View MSA
124300321 5266 SBM View MSA
124238203 5268 Malvidae View MSA
124062214 5270 Rosid View MSA
123741156 5271 Pentapetalae View MSA
122791709 5272 Eudicot View MSA
121296231 5274 Embryophyte View MSA
123425674 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.659        
cufflinks 3.315        
cufflinks 0.942       Low
cufflinks 4.381       High
cufflinks 0.846       Low
cufflinks 4.023        

0 Strain