Gene : AT3G52470 A. thaliana TAIR10
Defline:  (1 of 8) PTHR31415//PTHR31415:SF2 - FAMILY NOT NAMED // LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN-RELATED Genomic Order:  4273
Name:  ? AT3G52470 Secondary Identifier:  ? PAC:19660658
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G52470 0.5kb upstream 0.5kb upstream 1834 true Chr3: 19450149-19451982 Arabidopsis thaliana
AT3G52470 0.5kb upstream 0.5kb upstream 500 false Chr3: 19450149-19450648 Arabidopsis thaliana
AT3G52470 0.5kb downstream 0.5kb downstream 1834 true Chr3: 19450649-19452482 Arabidopsis thaliana
AT3G52470 0.5kb downstream 0.5kb downstream 500 false Chr3: 19451983-19452482 Arabidopsis thaliana
AT3G52470 1.0kb upstream 1.0kb upstream 2334 true Chr3: 19449649-19451982 Arabidopsis thaliana
AT3G52470 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19449649-19450648 Arabidopsis thaliana
AT3G52470 1.0kb downstream 1.0kb downstream 2334 true Chr3: 19450649-19452982 Arabidopsis thaliana
AT3G52470 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19451983-19452982 Arabidopsis thaliana
AT3G52470 2.0kb upstream 2.0kb upstream 3334 true Chr3: 19448649-19451982 Arabidopsis thaliana
AT3G52470 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19448649-19450648 Arabidopsis thaliana
AT3G52470 2.0kb downstream 2.0kb downstream 3334 true Chr3: 19450649-19453982 Arabidopsis thaliana
AT3G52470 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19451983-19453982 Arabidopsis thaliana
AT3G52470 5.0kb upstream 5.0kb upstream 6334 true Chr3: 19445649-19451982 Arabidopsis thaliana
AT3G52470 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19445649-19450648 Arabidopsis thaliana
AT3G52470 5.0kb downstream 5.0kb downstream 6334 true Chr3: 19450649-19456982 Arabidopsis thaliana
AT3G52470 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19451983-19456982 Arabidopsis thaliana
AT3G52470 10.0kb upstream 10.0kb upstream 11334 true Chr3: 19440649-19451982 Arabidopsis thaliana
AT3G52470 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19440649-19450648 Arabidopsis thaliana
AT3G52470 10.0kb downstream 10.0kb downstream 11334 true Chr3: 19450649-19461982 Arabidopsis thaliana
AT3G52470 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19451983-19461982 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362656 5261 Brassicaceae View MSA
123840054 5264 Brassicales-Malvales View MSA
124338455 5266 SBM View MSA
124238163 5268 Malvidae View MSA
124060633 5270 Rosid View MSA
123748303 5271 Pentapetalae View MSA
122796873 5272 Eudicot View MSA
122050146 5273 Angiosperm View MSA
121351108 5274 Embryophyte View MSA
123382008 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.534     High  
cufflinks 92.241     High  
cufflinks 23.019        
cufflinks 103.282     High  
cufflinks 17.686       Low
cufflinks 91.855     High  

0 Strain