Gene : AT1G12620 A. thaliana TAIR10
Defline:  (1 of 423) PF13041 - PPR repeat family (PPR_2) Genomic Order:  1248
Name:  ? AT1G12620 Secondary Identifier:  ? PAC:19653757
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G12620 0.5kb upstream 0.5kb upstream 2991 true Chr1: 4294594-4297584 Arabidopsis thaliana
AT1G12620 0.5kb upstream 0.5kb upstream 500 false Chr1: 4297085-4297584 Arabidopsis thaliana
AT1G12620 0.5kb downstream 0.5kb downstream 2991 true Chr1: 4294094-4297084 Arabidopsis thaliana
AT1G12620 0.5kb downstream 0.5kb downstream 500 false Chr1: 4294094-4294593 Arabidopsis thaliana
AT1G12620 1.0kb upstream 1.0kb upstream 3491 true Chr1: 4294594-4298084 Arabidopsis thaliana
AT1G12620 1.0kb upstream 1.0kb upstream 1000 false Chr1: 4297085-4298084 Arabidopsis thaliana
AT1G12620 1.0kb downstream 1.0kb downstream 3491 true Chr1: 4293594-4297084 Arabidopsis thaliana
AT1G12620 1.0kb downstream 1.0kb downstream 1000 false Chr1: 4293594-4294593 Arabidopsis thaliana
AT1G12620 2.0kb upstream 2.0kb upstream 4491 true Chr1: 4294594-4299084 Arabidopsis thaliana
AT1G12620 2.0kb upstream 2.0kb upstream 2000 false Chr1: 4297085-4299084 Arabidopsis thaliana
AT1G12620 2.0kb downstream 2.0kb downstream 4491 true Chr1: 4292594-4297084 Arabidopsis thaliana
AT1G12620 2.0kb downstream 2.0kb downstream 2000 false Chr1: 4292594-4294593 Arabidopsis thaliana
AT1G12620 5.0kb upstream 5.0kb upstream 7491 true Chr1: 4294594-4302084 Arabidopsis thaliana
AT1G12620 5.0kb upstream 5.0kb upstream 5000 false Chr1: 4297085-4302084 Arabidopsis thaliana
AT1G12620 5.0kb downstream 5.0kb downstream 7491 true Chr1: 4289594-4297084 Arabidopsis thaliana
AT1G12620 5.0kb downstream 5.0kb downstream 5000 false Chr1: 4289594-4294593 Arabidopsis thaliana
AT1G12620 10.0kb upstream 10.0kb upstream 12491 true Chr1: 4294594-4307084 Arabidopsis thaliana
AT1G12620 10.0kb upstream 10.0kb upstream 10000 false Chr1: 4297085-4307084 Arabidopsis thaliana
AT1G12620 10.0kb downstream 10.0kb downstream 12491 true Chr1: 4284594-4297084 Arabidopsis thaliana
AT1G12620 10.0kb downstream 10.0kb downstream 10000 false Chr1: 4284594-4294593 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381662 5261 Brassicaceae View MSA
123841436 5264 Brassicales-Malvales View MSA
124350672 5266 SBM View MSA
124254642 5268 Malvidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.381       Low
cufflinks 3.64       High
cufflinks 2.571        
cufflinks 3.193        
cufflinks 2.434        
cufflinks 3.223        

0 Strain