Gene : AT1G12400 A. thaliana TAIR10
Defline:  (1 of 2) K10845 - TFIIH basal transcription factor complex TTD-A subunit (TTDA, GTF2H5, TFB5) Genomic Order:  1225
Name:  ? AT1G12400 Secondary Identifier:  ? PAC:19656625
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G12400 0.5kb upstream 0.5kb upstream 1475 true Chr1: 4221363-4222837 Arabidopsis thaliana
AT1G12400 0.5kb upstream 0.5kb upstream 500 false Chr1: 4221363-4221862 Arabidopsis thaliana
AT1G12400 0.5kb downstream 0.5kb downstream 1475 true Chr1: 4221863-4223337 Arabidopsis thaliana
AT1G12400 0.5kb downstream 0.5kb downstream 500 false Chr1: 4222838-4223337 Arabidopsis thaliana
AT1G12400 1.0kb upstream 1.0kb upstream 1975 true Chr1: 4220863-4222837 Arabidopsis thaliana
AT1G12400 1.0kb upstream 1.0kb upstream 1000 false Chr1: 4220863-4221862 Arabidopsis thaliana
AT1G12400 1.0kb downstream 1.0kb downstream 1975 true Chr1: 4221863-4223837 Arabidopsis thaliana
AT1G12400 1.0kb downstream 1.0kb downstream 1000 false Chr1: 4222838-4223837 Arabidopsis thaliana
AT1G12400 2.0kb upstream 2.0kb upstream 2975 true Chr1: 4219863-4222837 Arabidopsis thaliana
AT1G12400 2.0kb upstream 2.0kb upstream 2000 false Chr1: 4219863-4221862 Arabidopsis thaliana
AT1G12400 2.0kb downstream 2.0kb downstream 2975 true Chr1: 4221863-4224837 Arabidopsis thaliana
AT1G12400 2.0kb downstream 2.0kb downstream 2000 false Chr1: 4222838-4224837 Arabidopsis thaliana
AT1G12400 5.0kb upstream 5.0kb upstream 5975 true Chr1: 4216863-4222837 Arabidopsis thaliana
AT1G12400 5.0kb upstream 5.0kb upstream 5000 false Chr1: 4216863-4221862 Arabidopsis thaliana
AT1G12400 5.0kb downstream 5.0kb downstream 5975 true Chr1: 4221863-4227837 Arabidopsis thaliana
AT1G12400 5.0kb downstream 5.0kb downstream 5000 false Chr1: 4222838-4227837 Arabidopsis thaliana
AT1G12400 10.0kb upstream 10.0kb upstream 10975 true Chr1: 4211863-4222837 Arabidopsis thaliana
AT1G12400 10.0kb upstream 10.0kb upstream 10000 false Chr1: 4211863-4221862 Arabidopsis thaliana
AT1G12400 10.0kb downstream 10.0kb downstream 10975 true Chr1: 4221863-4232837 Arabidopsis thaliana
AT1G12400 10.0kb downstream 10.0kb downstream 10000 false Chr1: 4222838-4232837 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028494 5273 Angiosperm View MSA
122374875 5261 Brassicaceae View MSA
123831220 5264 Brassicales-Malvales View MSA
124321719 5266 SBM View MSA
124237192 5268 Malvidae View MSA
124064736 5270 Rosid View MSA
123736521 5271 Pentapetalae View MSA
122785629 5272 Eudicot View MSA
121345016 5274 Embryophyte View MSA
123425151 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.442        
cufflinks 11.482        
cufflinks 7.299       Low
cufflinks 11.732        
cufflinks 7.312       Low
cufflinks 10.751        

0 Strain