Gene : AT1G11950 A. thaliana TAIR10
Defline:  (1 of 6) K15601 - lysine-specific demethylase 3 [EC:1.14.11.-] (KDM3) Genomic Order:  1177
Name:  ? AT1G11950 Secondary Identifier:  ? PAC:19657142
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G11950 0.5kb upstream 0.5kb upstream 4672 true Chr1: 4034587-4039258 Arabidopsis thaliana
AT1G11950 0.5kb upstream 0.5kb upstream 500 false Chr1: 4038759-4039258 Arabidopsis thaliana
AT1G11950 0.5kb downstream 0.5kb downstream 4672 true Chr1: 4034087-4038758 Arabidopsis thaliana
AT1G11950 0.5kb downstream 0.5kb downstream 500 false Chr1: 4034087-4034586 Arabidopsis thaliana
AT1G11950 1.0kb upstream 1.0kb upstream 5172 true Chr1: 4034587-4039758 Arabidopsis thaliana
AT1G11950 1.0kb upstream 1.0kb upstream 1000 false Chr1: 4038759-4039758 Arabidopsis thaliana
AT1G11950 1.0kb downstream 1.0kb downstream 5172 true Chr1: 4033587-4038758 Arabidopsis thaliana
AT1G11950 1.0kb downstream 1.0kb downstream 1000 false Chr1: 4033587-4034586 Arabidopsis thaliana
AT1G11950 2.0kb upstream 2.0kb upstream 6172 true Chr1: 4034587-4040758 Arabidopsis thaliana
AT1G11950 2.0kb upstream 2.0kb upstream 2000 false Chr1: 4038759-4040758 Arabidopsis thaliana
AT1G11950 2.0kb downstream 2.0kb downstream 6172 true Chr1: 4032587-4038758 Arabidopsis thaliana
AT1G11950 2.0kb downstream 2.0kb downstream 2000 false Chr1: 4032587-4034586 Arabidopsis thaliana
AT1G11950 5.0kb upstream 5.0kb upstream 9172 true Chr1: 4034587-4043758 Arabidopsis thaliana
AT1G11950 5.0kb upstream 5.0kb upstream 5000 false Chr1: 4038759-4043758 Arabidopsis thaliana
AT1G11950 5.0kb downstream 5.0kb downstream 9172 true Chr1: 4029587-4038758 Arabidopsis thaliana
AT1G11950 5.0kb downstream 5.0kb downstream 5000 false Chr1: 4029587-4034586 Arabidopsis thaliana
AT1G11950 10.0kb upstream 10.0kb upstream 14172 true Chr1: 4034587-4048758 Arabidopsis thaliana
AT1G11950 10.0kb upstream 10.0kb upstream 10000 false Chr1: 4038759-4048758 Arabidopsis thaliana
AT1G11950 10.0kb downstream 10.0kb downstream 14172 true Chr1: 4024587-4038758 Arabidopsis thaliana
AT1G11950 10.0kb downstream 10.0kb downstream 10000 false Chr1: 4024587-4034586 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362697 5261 Brassicaceae View MSA
123836778 5264 Brassicales-Malvales View MSA
124339164 5266 SBM View MSA
124241438 5268 Malvidae View MSA
124073545 5270 Rosid View MSA
123747808 5271 Pentapetalae View MSA
122796242 5272 Eudicot View MSA
122050393 5273 Angiosperm View MSA
121349542 5274 Embryophyte View MSA
123425923 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.897        
cufflinks 3.995        
cufflinks 2.863        
cufflinks 4.12        
cufflinks 2.234       Low
cufflinks 3.288        

0 Strain