Gene : CPISCA A. thaliana TAIR10
Primary Identifier:  ? AT1G10500 Defline:  (1 of 1) PTHR10072:SF48 - IRON-SULFUR ASSEMBLY PROTEIN ISCA, CHLOROPLASTIC
Genomic Order:  1013 Name:  ? AT1G10500
Secondary Identifier:  ? PAC:19657383
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G10500 0.5kb upstream 0.5kb upstream 1986 true Chr1: 3460000-3461985 Arabidopsis thaliana
AT1G10500 0.5kb upstream 0.5kb upstream 500 false Chr1: 3461486-3461985 Arabidopsis thaliana
AT1G10500 0.5kb downstream 0.5kb downstream 1986 true Chr1: 3459500-3461485 Arabidopsis thaliana
AT1G10500 0.5kb downstream 0.5kb downstream 500 false Chr1: 3459500-3459999 Arabidopsis thaliana
AT1G10500 1.0kb upstream 1.0kb upstream 2486 true Chr1: 3460000-3462485 Arabidopsis thaliana
AT1G10500 1.0kb upstream 1.0kb upstream 1000 false Chr1: 3461486-3462485 Arabidopsis thaliana
AT1G10500 1.0kb downstream 1.0kb downstream 2486 true Chr1: 3459000-3461485 Arabidopsis thaliana
AT1G10500 1.0kb downstream 1.0kb downstream 1000 false Chr1: 3459000-3459999 Arabidopsis thaliana
AT1G10500 2.0kb upstream 2.0kb upstream 3486 true Chr1: 3460000-3463485 Arabidopsis thaliana
AT1G10500 2.0kb upstream 2.0kb upstream 2000 false Chr1: 3461486-3463485 Arabidopsis thaliana
AT1G10500 2.0kb downstream 2.0kb downstream 3486 true Chr1: 3458000-3461485 Arabidopsis thaliana
AT1G10500 2.0kb downstream 2.0kb downstream 2000 false Chr1: 3458000-3459999 Arabidopsis thaliana
AT1G10500 5.0kb upstream 5.0kb upstream 6486 true Chr1: 3460000-3466485 Arabidopsis thaliana
AT1G10500 5.0kb upstream 5.0kb upstream 5000 false Chr1: 3461486-3466485 Arabidopsis thaliana
AT1G10500 5.0kb downstream 5.0kb downstream 6486 true Chr1: 3455000-3461485 Arabidopsis thaliana
AT1G10500 5.0kb downstream 5.0kb downstream 5000 false Chr1: 3455000-3459999 Arabidopsis thaliana
AT1G10500 10.0kb upstream 10.0kb upstream 11486 true Chr1: 3460000-3471485 Arabidopsis thaliana
AT1G10500 10.0kb upstream 10.0kb upstream 10000 false Chr1: 3461486-3471485 Arabidopsis thaliana
AT1G10500 10.0kb downstream 10.0kb downstream 11486 true Chr1: 3450000-3461485 Arabidopsis thaliana
AT1G10500 10.0kb downstream 10.0kb downstream 10000 false Chr1: 3450000-3459999 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367072 5261 Brassicaceae View MSA
123838817 5264 Brassicales-Malvales View MSA
124350235 5266 SBM View MSA
124238318 5268 Malvidae View MSA
124065003 5270 Rosid View MSA
123740000 5271 Pentapetalae View MSA
122792600 5272 Eudicot View MSA
122046362 5273 Angiosperm View MSA
121346119 5274 Embryophyte View MSA
123427871 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 53.961     High  
cufflinks 18.083        
cufflinks 56.055     High  
cufflinks 19.832        
cufflinks 63.186     High High
cufflinks 15.665       Low

0 Strain