Gene : OPT2 A. thaliana TAIR10
Primary Identifier:  ? AT1G09930 Defline:  (1 of 1) PTHR22601//PTHR22601:SF23 - ISP4 LIKE PROTEIN // OLIGOPEPTIDE TRANSPORTER 2
Genomic Order:  954 Name:  ? AT1G09930
Secondary Identifier:  ? PAC:19649558
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G09930 0.5kb upstream 0.5kb upstream 3054 true Chr1: 3227490-3230543 Arabidopsis thaliana
AT1G09930 0.5kb upstream 0.5kb upstream 500 false Chr1: 3230044-3230543 Arabidopsis thaliana
AT1G09930 0.5kb downstream 0.5kb downstream 3054 true Chr1: 3226990-3230043 Arabidopsis thaliana
AT1G09930 0.5kb downstream 0.5kb downstream 500 false Chr1: 3226990-3227489 Arabidopsis thaliana
AT1G09930 1.0kb upstream 1.0kb upstream 3554 true Chr1: 3227490-3231043 Arabidopsis thaliana
AT1G09930 1.0kb upstream 1.0kb upstream 1000 false Chr1: 3230044-3231043 Arabidopsis thaliana
AT1G09930 1.0kb downstream 1.0kb downstream 3554 true Chr1: 3226490-3230043 Arabidopsis thaliana
AT1G09930 1.0kb downstream 1.0kb downstream 1000 false Chr1: 3226490-3227489 Arabidopsis thaliana
AT1G09930 2.0kb upstream 2.0kb upstream 4554 true Chr1: 3227490-3232043 Arabidopsis thaliana
AT1G09930 2.0kb upstream 2.0kb upstream 2000 false Chr1: 3230044-3232043 Arabidopsis thaliana
AT1G09930 2.0kb downstream 2.0kb downstream 4554 true Chr1: 3225490-3230043 Arabidopsis thaliana
AT1G09930 2.0kb downstream 2.0kb downstream 2000 false Chr1: 3225490-3227489 Arabidopsis thaliana
AT1G09930 5.0kb upstream 5.0kb upstream 7554 true Chr1: 3227490-3235043 Arabidopsis thaliana
AT1G09930 5.0kb upstream 5.0kb upstream 5000 false Chr1: 3230044-3235043 Arabidopsis thaliana
AT1G09930 5.0kb downstream 5.0kb downstream 7554 true Chr1: 3222490-3230043 Arabidopsis thaliana
AT1G09930 5.0kb downstream 5.0kb downstream 5000 false Chr1: 3222490-3227489 Arabidopsis thaliana
AT1G09930 10.0kb upstream 10.0kb upstream 12554 true Chr1: 3227490-3240043 Arabidopsis thaliana
AT1G09930 10.0kb upstream 10.0kb upstream 10000 false Chr1: 3230044-3240043 Arabidopsis thaliana
AT1G09930 10.0kb downstream 10.0kb downstream 12554 true Chr1: 3217490-3230043 Arabidopsis thaliana
AT1G09930 10.0kb downstream 10.0kb downstream 10000 false Chr1: 3217490-3227489 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364946 5261 Brassicaceae View MSA
123830222 5264 Brassicales-Malvales View MSA
124342659 5266 SBM View MSA
124240849 5268 Malvidae View MSA
124072346 5270 Rosid View MSA
123738802 5271 Pentapetalae View MSA
122788637 5272 Eudicot View MSA
122046931 5273 Angiosperm View MSA
121351141 5274 Embryophyte View MSA
123382023 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.682        
cufflinks 0.996        
cufflinks 0.049     Low Low
cufflinks 0.794        
cufflinks 0.034     Low Low
cufflinks 1.5        

0 Strain