Gene : PKDM7D A. thaliana TAIR10
Primary Identifier:  ? AT1G08620 Defline:  (1 of 1) PTHR10694//PTHR10694:SF53 - JUMONJI DOMAIN CONTAINING PROTEIN // SUBFAMILY NOT NAMED
Genomic Order:  812 Name:  ? AT1G08620
Secondary Identifier:  ? PAC:19654961
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G08620 0.5kb upstream 0.5kb upstream 7485 true Chr1: 2736274-2743758 Arabidopsis thaliana
AT1G08620 0.5kb upstream 0.5kb upstream 500 false Chr1: 2736274-2736773 Arabidopsis thaliana
AT1G08620 0.5kb downstream 0.5kb downstream 7485 true Chr1: 2736774-2744258 Arabidopsis thaliana
AT1G08620 0.5kb downstream 0.5kb downstream 500 false Chr1: 2743759-2744258 Arabidopsis thaliana
AT1G08620 1.0kb upstream 1.0kb upstream 7985 true Chr1: 2735774-2743758 Arabidopsis thaliana
AT1G08620 1.0kb upstream 1.0kb upstream 1000 false Chr1: 2735774-2736773 Arabidopsis thaliana
AT1G08620 1.0kb downstream 1.0kb downstream 7985 true Chr1: 2736774-2744758 Arabidopsis thaliana
AT1G08620 1.0kb downstream 1.0kb downstream 1000 false Chr1: 2743759-2744758 Arabidopsis thaliana
AT1G08620 2.0kb upstream 2.0kb upstream 8985 true Chr1: 2734774-2743758 Arabidopsis thaliana
AT1G08620 2.0kb upstream 2.0kb upstream 2000 false Chr1: 2734774-2736773 Arabidopsis thaliana
AT1G08620 2.0kb downstream 2.0kb downstream 8985 true Chr1: 2736774-2745758 Arabidopsis thaliana
AT1G08620 2.0kb downstream 2.0kb downstream 2000 false Chr1: 2743759-2745758 Arabidopsis thaliana
AT1G08620 5.0kb upstream 5.0kb upstream 11985 true Chr1: 2731774-2743758 Arabidopsis thaliana
AT1G08620 5.0kb upstream 5.0kb upstream 5000 false Chr1: 2731774-2736773 Arabidopsis thaliana
AT1G08620 5.0kb downstream 5.0kb downstream 11985 true Chr1: 2736774-2748758 Arabidopsis thaliana
AT1G08620 5.0kb downstream 5.0kb downstream 5000 false Chr1: 2743759-2748758 Arabidopsis thaliana
AT1G08620 10.0kb upstream 10.0kb upstream 16985 true Chr1: 2726774-2743758 Arabidopsis thaliana
AT1G08620 10.0kb upstream 10.0kb upstream 10000 false Chr1: 2726774-2736773 Arabidopsis thaliana
AT1G08620 10.0kb downstream 10.0kb downstream 16985 true Chr1: 2736774-2753758 Arabidopsis thaliana
AT1G08620 10.0kb downstream 10.0kb downstream 10000 false Chr1: 2743759-2753758 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371540 5261 Brassicaceae View MSA
123833947 5264 Brassicales-Malvales View MSA
124350305 5266 SBM View MSA
124241439 5268 Malvidae View MSA
124068572 5270 Rosid View MSA
123751211 5271 Pentapetalae View MSA
122797514 5272 Eudicot View MSA
122050637 5273 Angiosperm View MSA
123428928 5275 Viridiplantae View MSA
121350129 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.914        
cufflinks 4.455        
cufflinks 2.24       Low
cufflinks 4.436        
cufflinks 2.466        
cufflinks 4.006        

0 Strain