Gene : AT1G17147 A. thaliana TAIR10
Defline:  (1 of 2) PTHR34777//PTHR34777:SF1 - FAMILY NOT NAMED // VQ MOTIF-CONTAINING PROTEIN Genomic Order:  1725
Name:  ? AT1G17147 Secondary Identifier:  ? PAC:19649948
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G17147 0.5kb upstream 0.5kb upstream 1079 true Chr1: 5863431-5864509 Arabidopsis thaliana
AT1G17147 0.5kb upstream 0.5kb upstream 500 false Chr1: 5864010-5864509 Arabidopsis thaliana
AT1G17147 0.5kb downstream 0.5kb downstream 1079 true Chr1: 5862931-5864009 Arabidopsis thaliana
AT1G17147 0.5kb downstream 0.5kb downstream 500 false Chr1: 5862931-5863430 Arabidopsis thaliana
AT1G17147 1.0kb upstream 1.0kb upstream 1579 true Chr1: 5863431-5865009 Arabidopsis thaliana
AT1G17147 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5864010-5865009 Arabidopsis thaliana
AT1G17147 1.0kb downstream 1.0kb downstream 1579 true Chr1: 5862431-5864009 Arabidopsis thaliana
AT1G17147 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5862431-5863430 Arabidopsis thaliana
AT1G17147 2.0kb upstream 2.0kb upstream 2579 true Chr1: 5863431-5866009 Arabidopsis thaliana
AT1G17147 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5864010-5866009 Arabidopsis thaliana
AT1G17147 2.0kb downstream 2.0kb downstream 2579 true Chr1: 5861431-5864009 Arabidopsis thaliana
AT1G17147 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5861431-5863430 Arabidopsis thaliana
AT1G17147 5.0kb upstream 5.0kb upstream 5579 true Chr1: 5863431-5869009 Arabidopsis thaliana
AT1G17147 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5864010-5869009 Arabidopsis thaliana
AT1G17147 5.0kb downstream 5.0kb downstream 5579 true Chr1: 5858431-5864009 Arabidopsis thaliana
AT1G17147 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5858431-5863430 Arabidopsis thaliana
AT1G17147 10.0kb upstream 10.0kb upstream 10579 true Chr1: 5863431-5874009 Arabidopsis thaliana
AT1G17147 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5864010-5874009 Arabidopsis thaliana
AT1G17147 10.0kb downstream 10.0kb downstream 10579 true Chr1: 5853431-5864009 Arabidopsis thaliana
AT1G17147 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5853431-5863430 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026461 5273 Angiosperm View MSA
122379980 5261 Brassicaceae View MSA
123840624 5264 Brassicales-Malvales View MSA
124342218 5266 SBM View MSA
124240018 5268 Malvidae View MSA
124050155 5270 Rosid View MSA
123744131 5271 Pentapetalae View MSA
122770912 5272 Eudicot View MSA
121296343 5274 Embryophyte View MSA
123334522 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.129        
cufflinks 5.973        
cufflinks 11.166        
cufflinks 15.696       High
cufflinks 10.1        
cufflinks 4.204       Low

0 Strain