Gene : AT1G17310 A. thaliana TAIR10
Defline:  (1 of 6) PTHR11945//PTHR11945:SF204 - MADS BOX PROTEIN // F21D18.12-RELATED Genomic Order:  1744
Name:  ? AT1G17310 Secondary Identifier:  ? PAC:19656321
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G17310 0.5kb upstream 0.5kb upstream 1154 true Chr1: 5928014-5929167 Arabidopsis thaliana
AT1G17310 0.5kb upstream 0.5kb upstream 500 false Chr1: 5928668-5929167 Arabidopsis thaliana
AT1G17310 0.5kb downstream 0.5kb downstream 1154 true Chr1: 5927514-5928667 Arabidopsis thaliana
AT1G17310 0.5kb downstream 0.5kb downstream 500 false Chr1: 5927514-5928013 Arabidopsis thaliana
AT1G17310 1.0kb upstream 1.0kb upstream 1654 true Chr1: 5928014-5929667 Arabidopsis thaliana
AT1G17310 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5928668-5929667 Arabidopsis thaliana
AT1G17310 1.0kb downstream 1.0kb downstream 1654 true Chr1: 5927014-5928667 Arabidopsis thaliana
AT1G17310 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5927014-5928013 Arabidopsis thaliana
AT1G17310 2.0kb upstream 2.0kb upstream 2654 true Chr1: 5928014-5930667 Arabidopsis thaliana
AT1G17310 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5928668-5930667 Arabidopsis thaliana
AT1G17310 2.0kb downstream 2.0kb downstream 2654 true Chr1: 5926014-5928667 Arabidopsis thaliana
AT1G17310 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5926014-5928013 Arabidopsis thaliana
AT1G17310 5.0kb upstream 5.0kb upstream 5654 true Chr1: 5928014-5933667 Arabidopsis thaliana
AT1G17310 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5928668-5933667 Arabidopsis thaliana
AT1G17310 5.0kb downstream 5.0kb downstream 5654 true Chr1: 5923014-5928667 Arabidopsis thaliana
AT1G17310 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5923014-5928013 Arabidopsis thaliana
AT1G17310 10.0kb upstream 10.0kb upstream 10654 true Chr1: 5928014-5938667 Arabidopsis thaliana
AT1G17310 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5928668-5938667 Arabidopsis thaliana
AT1G17310 10.0kb downstream 10.0kb downstream 10654 true Chr1: 5918014-5928667 Arabidopsis thaliana
AT1G17310 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5918014-5928013 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368122 5261 Brassicaceae View MSA
123839755 5264 Brassicales-Malvales View MSA
124344954 5266 SBM View MSA
124246332 5268 Malvidae View MSA
124075331 5270 Rosid View MSA
123753664 5271 Pentapetalae View MSA
122797561 5272 Eudicot View MSA
122050867 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.022     Low Low
cufflinks 0.116     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.246     Low High
cufflinks 0.041     Low  
cufflinks 0.17     Low  

0 Strain