Gene : AT1G16520 A. thaliana TAIR10
Genomic Order:  1662 Name:  ? AT1G16520
Secondary Identifier:  ? PAC:19655453
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G16520 0.5kb upstream 0.5kb upstream 2908 true Chr1: 5648260-5651167 Arabidopsis thaliana
AT1G16520 0.5kb upstream 0.5kb upstream 500 false Chr1: 5648260-5648759 Arabidopsis thaliana
AT1G16520 0.5kb downstream 0.5kb downstream 2908 true Chr1: 5648760-5651667 Arabidopsis thaliana
AT1G16520 0.5kb downstream 0.5kb downstream 500 false Chr1: 5651168-5651667 Arabidopsis thaliana
AT1G16520 1.0kb upstream 1.0kb upstream 3408 true Chr1: 5647760-5651167 Arabidopsis thaliana
AT1G16520 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5647760-5648759 Arabidopsis thaliana
AT1G16520 1.0kb downstream 1.0kb downstream 3408 true Chr1: 5648760-5652167 Arabidopsis thaliana
AT1G16520 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5651168-5652167 Arabidopsis thaliana
AT1G16520 2.0kb upstream 2.0kb upstream 4408 true Chr1: 5646760-5651167 Arabidopsis thaliana
AT1G16520 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5646760-5648759 Arabidopsis thaliana
AT1G16520 2.0kb downstream 2.0kb downstream 4408 true Chr1: 5648760-5653167 Arabidopsis thaliana
AT1G16520 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5651168-5653167 Arabidopsis thaliana
AT1G16520 5.0kb upstream 5.0kb upstream 7408 true Chr1: 5643760-5651167 Arabidopsis thaliana
AT1G16520 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5643760-5648759 Arabidopsis thaliana
AT1G16520 5.0kb downstream 5.0kb downstream 7408 true Chr1: 5648760-5656167 Arabidopsis thaliana
AT1G16520 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5651168-5656167 Arabidopsis thaliana
AT1G16520 10.0kb upstream 10.0kb upstream 12408 true Chr1: 5638760-5651167 Arabidopsis thaliana
AT1G16520 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5638760-5648759 Arabidopsis thaliana
AT1G16520 10.0kb downstream 10.0kb downstream 12408 true Chr1: 5648760-5661167 Arabidopsis thaliana
AT1G16520 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5651168-5661167 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041257 5273 Angiosperm View MSA
122374468 5261 Brassicaceae View MSA
123834903 5264 Brassicales-Malvales View MSA
124345900 5266 SBM View MSA
124238121 5268 Malvidae View MSA
124063588 5270 Rosid View MSA
123740495 5271 Pentapetalae View MSA
122793285 5272 Eudicot View MSA
121349608 5274 Embryophyte View MSA
123425538 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.909        
cufflinks 23.309        
cufflinks 3.633       Low
cufflinks 18.966        
cufflinks 3.05       Low
cufflinks 22.255        

0 Strain