Gene : CENP-C A. thaliana TAIR10
Primary Identifier:  ? AT1G15660 Defline:  (1 of 1) PTHR16684 - CENTROMERE PROTEIN C
Genomic Order:  1572 Name:  ? AT1G15660
Secondary Identifier:  ? PAC:19651752
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G15660 0.5kb upstream 0.5kb upstream 4585 true Chr1: 5380670-5385254 Arabidopsis thaliana
AT1G15660 0.5kb upstream 0.5kb upstream 500 false Chr1: 5380670-5381169 Arabidopsis thaliana
AT1G15660 0.5kb downstream 0.5kb downstream 4585 true Chr1: 5381170-5385754 Arabidopsis thaliana
AT1G15660 0.5kb downstream 0.5kb downstream 500 false Chr1: 5385255-5385754 Arabidopsis thaliana
AT1G15660 1.0kb upstream 1.0kb upstream 5085 true Chr1: 5380170-5385254 Arabidopsis thaliana
AT1G15660 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5380170-5381169 Arabidopsis thaliana
AT1G15660 1.0kb downstream 1.0kb downstream 5085 true Chr1: 5381170-5386254 Arabidopsis thaliana
AT1G15660 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5385255-5386254 Arabidopsis thaliana
AT1G15660 2.0kb upstream 2.0kb upstream 6085 true Chr1: 5379170-5385254 Arabidopsis thaliana
AT1G15660 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5379170-5381169 Arabidopsis thaliana
AT1G15660 2.0kb downstream 2.0kb downstream 6085 true Chr1: 5381170-5387254 Arabidopsis thaliana
AT1G15660 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5385255-5387254 Arabidopsis thaliana
AT1G15660 5.0kb upstream 5.0kb upstream 9085 true Chr1: 5376170-5385254 Arabidopsis thaliana
AT1G15660 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5376170-5381169 Arabidopsis thaliana
AT1G15660 5.0kb downstream 5.0kb downstream 9085 true Chr1: 5381170-5390254 Arabidopsis thaliana
AT1G15660 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5385255-5390254 Arabidopsis thaliana
AT1G15660 10.0kb upstream 10.0kb upstream 14085 true Chr1: 5371170-5385254 Arabidopsis thaliana
AT1G15660 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5371170-5381169 Arabidopsis thaliana
AT1G15660 10.0kb downstream 10.0kb downstream 14085 true Chr1: 5381170-5395254 Arabidopsis thaliana
AT1G15660 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5385255-5395254 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369390 5261 Brassicaceae View MSA
123832849 5264 Brassicales-Malvales View MSA
124348219 5266 SBM View MSA
124245079 5268 Malvidae View MSA
124069711 5270 Rosid View MSA
123738687 5271 Pentapetalae View MSA
122788582 5272 Eudicot View MSA
122045185 5273 Angiosperm View MSA
121350045 5274 Embryophyte View MSA
123426660 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.048        
cufflinks 5.879        
cufflinks 3.242        
cufflinks 5.601        
cufflinks 2.529       Low
cufflinks 7.252       High

0 Strain