Gene : UPF3 A. thaliana TAIR10
Primary Identifier:  ? AT1G33980 Defline:  (1 of 1) K14328 - regulator of nonsense transcripts 3 (UPF3, RENT3)
Genomic Order:  3351 Name:  ? AT1G33980
Secondary Identifier:  ? PAC:19658223
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G33980 0.5kb upstream 0.5kb upstream 3931 true Chr1: 12351093-12355023 Arabidopsis thaliana
AT1G33980 0.5kb upstream 0.5kb upstream 500 false Chr1: 12351093-12351592 Arabidopsis thaliana
AT1G33980 0.5kb downstream 0.5kb downstream 3931 true Chr1: 12351593-12355523 Arabidopsis thaliana
AT1G33980 0.5kb downstream 0.5kb downstream 500 false Chr1: 12355024-12355523 Arabidopsis thaliana
AT1G33980 1.0kb upstream 1.0kb upstream 4431 true Chr1: 12350593-12355023 Arabidopsis thaliana
AT1G33980 1.0kb upstream 1.0kb upstream 1000 false Chr1: 12350593-12351592 Arabidopsis thaliana
AT1G33980 1.0kb downstream 1.0kb downstream 4431 true Chr1: 12351593-12356023 Arabidopsis thaliana
AT1G33980 1.0kb downstream 1.0kb downstream 1000 false Chr1: 12355024-12356023 Arabidopsis thaliana
AT1G33980 2.0kb upstream 2.0kb upstream 5431 true Chr1: 12349593-12355023 Arabidopsis thaliana
AT1G33980 2.0kb upstream 2.0kb upstream 2000 false Chr1: 12349593-12351592 Arabidopsis thaliana
AT1G33980 2.0kb downstream 2.0kb downstream 5431 true Chr1: 12351593-12357023 Arabidopsis thaliana
AT1G33980 2.0kb downstream 2.0kb downstream 2000 false Chr1: 12355024-12357023 Arabidopsis thaliana
AT1G33980 5.0kb upstream 5.0kb upstream 8431 true Chr1: 12346593-12355023 Arabidopsis thaliana
AT1G33980 5.0kb upstream 5.0kb upstream 5000 false Chr1: 12346593-12351592 Arabidopsis thaliana
AT1G33980 5.0kb downstream 5.0kb downstream 8431 true Chr1: 12351593-12360023 Arabidopsis thaliana
AT1G33980 5.0kb downstream 5.0kb downstream 5000 false Chr1: 12355024-12360023 Arabidopsis thaliana
AT1G33980 10.0kb upstream 10.0kb upstream 13431 true Chr1: 12341593-12355023 Arabidopsis thaliana
AT1G33980 10.0kb upstream 10.0kb upstream 10000 false Chr1: 12341593-12351592 Arabidopsis thaliana
AT1G33980 10.0kb downstream 10.0kb downstream 13431 true Chr1: 12351593-12365023 Arabidopsis thaliana
AT1G33980 10.0kb downstream 10.0kb downstream 10000 false Chr1: 12355024-12365023 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041498 5273 Angiosperm View MSA
122379729 5261 Brassicaceae View MSA
123832807 5264 Brassicales-Malvales View MSA
124338059 5266 SBM View MSA
124249674 5268 Malvidae View MSA
124070961 5270 Rosid View MSA
123750498 5271 Pentapetalae View MSA
122788511 5272 Eudicot View MSA
121351189 5274 Embryophyte View MSA
123425600 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.287        
cufflinks 9.403        
cufflinks 7.349        
cufflinks 10.217       High
cufflinks 7.738        
cufflinks 8.542        

0 Strain