Gene : AT1G13640 A. thaliana TAIR10
Defline:  (1 of 3) PTHR15245//PTHR15245:SF11 - SYMPLEKIN-RELATED // PHOSPHATIDYLINOSITOL 3-KINASE-RELATED PROTEIN KINASE Genomic Order:  1360
Name:  ? AT1G13640 Secondary Identifier:  ? PAC:19651466
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6351 Arabidopsis thaliana pathologic  
Athaliana PWY-6352 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G13640 0.5kb upstream 0.5kb upstream 3286 true Chr1: 4677027-4680312 Arabidopsis thaliana
AT1G13640 0.5kb upstream 0.5kb upstream 500 false Chr1: 4679813-4680312 Arabidopsis thaliana
AT1G13640 0.5kb downstream 0.5kb downstream 3286 true Chr1: 4676527-4679812 Arabidopsis thaliana
AT1G13640 0.5kb downstream 0.5kb downstream 500 false Chr1: 4676527-4677026 Arabidopsis thaliana
AT1G13640 1.0kb upstream 1.0kb upstream 3786 true Chr1: 4677027-4680812 Arabidopsis thaliana
AT1G13640 1.0kb upstream 1.0kb upstream 1000 false Chr1: 4679813-4680812 Arabidopsis thaliana
AT1G13640 1.0kb downstream 1.0kb downstream 3786 true Chr1: 4676027-4679812 Arabidopsis thaliana
AT1G13640 1.0kb downstream 1.0kb downstream 1000 false Chr1: 4676027-4677026 Arabidopsis thaliana
AT1G13640 2.0kb upstream 2.0kb upstream 4786 true Chr1: 4677027-4681812 Arabidopsis thaliana
AT1G13640 2.0kb upstream 2.0kb upstream 2000 false Chr1: 4679813-4681812 Arabidopsis thaliana
AT1G13640 2.0kb downstream 2.0kb downstream 4786 true Chr1: 4675027-4679812 Arabidopsis thaliana
AT1G13640 2.0kb downstream 2.0kb downstream 2000 false Chr1: 4675027-4677026 Arabidopsis thaliana
AT1G13640 5.0kb upstream 5.0kb upstream 7786 true Chr1: 4677027-4684812 Arabidopsis thaliana
AT1G13640 5.0kb upstream 5.0kb upstream 5000 false Chr1: 4679813-4684812 Arabidopsis thaliana
AT1G13640 5.0kb downstream 5.0kb downstream 7786 true Chr1: 4672027-4679812 Arabidopsis thaliana
AT1G13640 5.0kb downstream 5.0kb downstream 5000 false Chr1: 4672027-4677026 Arabidopsis thaliana
AT1G13640 10.0kb upstream 10.0kb upstream 12786 true Chr1: 4677027-4689812 Arabidopsis thaliana
AT1G13640 10.0kb upstream 10.0kb upstream 10000 false Chr1: 4679813-4689812 Arabidopsis thaliana
AT1G13640 10.0kb downstream 10.0kb downstream 12786 true Chr1: 4667027-4679812 Arabidopsis thaliana
AT1G13640 10.0kb downstream 10.0kb downstream 10000 false Chr1: 4667027-4677026 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377258 5261 Brassicaceae View MSA
123801484 5264 Brassicales-Malvales View MSA
124298782 5266 SBM View MSA
124150347 5268 Malvidae View MSA
123875977 5270 Rosid View MSA
123459718 5271 Pentapetalae View MSA
122495107 5272 Eudicot View MSA
122050959 5273 Angiosperm View MSA
121351687 5274 Embryophyte View MSA
123427554 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.253       High
cufflinks 21.02        
cufflinks 25.122        
cufflinks 19.906        
cufflinks 18.327       Low
cufflinks 21.007        

0 Strain