Gene : AT1G01440 A. thaliana TAIR10
Defline:  (1 of 6) PF11331 - Probable zinc-ribbon domain (zinc_ribbon_12) Genomic Order:  47
Name:  ? AT1G01440 Secondary Identifier:  ? PAC:19652813
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G01440 0.5kb upstream 0.5kb upstream 3217 true Chr1: 159856-163072 Arabidopsis thaliana
AT1G01440 0.5kb upstream 0.5kb upstream 500 false Chr1: 162573-163072 Arabidopsis thaliana
AT1G01440 0.5kb downstream 0.5kb downstream 3217 true Chr1: 159356-162572 Arabidopsis thaliana
AT1G01440 0.5kb downstream 0.5kb downstream 500 false Chr1: 159356-159855 Arabidopsis thaliana
AT1G01440 1.0kb upstream 1.0kb upstream 3717 true Chr1: 159856-163572 Arabidopsis thaliana
AT1G01440 1.0kb upstream 1.0kb upstream 1000 false Chr1: 162573-163572 Arabidopsis thaliana
AT1G01440 1.0kb downstream 1.0kb downstream 3717 true Chr1: 158856-162572 Arabidopsis thaliana
AT1G01440 1.0kb downstream 1.0kb downstream 1000 false Chr1: 158856-159855 Arabidopsis thaliana
AT1G01440 2.0kb upstream 2.0kb upstream 4717 true Chr1: 159856-164572 Arabidopsis thaliana
AT1G01440 2.0kb upstream 2.0kb upstream 2000 false Chr1: 162573-164572 Arabidopsis thaliana
AT1G01440 2.0kb downstream 2.0kb downstream 4717 true Chr1: 157856-162572 Arabidopsis thaliana
AT1G01440 2.0kb downstream 2.0kb downstream 2000 false Chr1: 157856-159855 Arabidopsis thaliana
AT1G01440 5.0kb upstream 5.0kb upstream 7717 true Chr1: 159856-167572 Arabidopsis thaliana
AT1G01440 5.0kb upstream 5.0kb upstream 5000 false Chr1: 162573-167572 Arabidopsis thaliana
AT1G01440 5.0kb downstream 5.0kb downstream 7717 true Chr1: 154856-162572 Arabidopsis thaliana
AT1G01440 5.0kb downstream 5.0kb downstream 5000 false Chr1: 154856-159855 Arabidopsis thaliana
AT1G01440 10.0kb upstream 10.0kb upstream 12717 true Chr1: 159856-172572 Arabidopsis thaliana
AT1G01440 10.0kb upstream 10.0kb upstream 10000 false Chr1: 162573-172572 Arabidopsis thaliana
AT1G01440 10.0kb downstream 10.0kb downstream 12717 true Chr1: 149856-162572 Arabidopsis thaliana
AT1G01440 10.0kb downstream 10.0kb downstream 10000 false Chr1: 149856-159855 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371685 5261 Brassicaceae View MSA
123800212 5264 Brassicales-Malvales View MSA
124297655 5266 SBM View MSA
124149486 5268 Malvidae View MSA
123875287 5270 Rosid View MSA
123459137 5271 Pentapetalae View MSA
122494532 5272 Eudicot View MSA
122050949 5273 Angiosperm View MSA
121349776 5274 Embryophyte View MSA
123381441 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.095       High
cufflinks 7.824       Low
cufflinks 9.769        
cufflinks 9.236        
cufflinks 12.019        
cufflinks 8.79        

0 Strain