Gene : AAE1 A. thaliana TAIR10
Primary Identifier:  ? AT1G20560 Defline:  (1 of 2) 6.2.1.1//6.2.1.2 - Acetate--CoA ligase / Acyl-activating enzyme // Butyrate--CoA ligase / Fatty acid thiokinase (medium chain)
Genomic Order:  2067 Name:  ? AT1G20560
Secondary Identifier:  ? PAC:19649092
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Sequence Feature Displayer

Ontology Annotation Displayer

13 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1121 Arabidopsis thaliana pathologic  
Athaliana PWY-321 Arabidopsis thaliana pathologic  
Athaliana PWY-5136 Arabidopsis thaliana pathologic  
Athaliana PWY-5143 Arabidopsis thaliana pathologic  
Athaliana PWY-5147 Arabidopsis thaliana pathologic  
Athaliana PWY-5156 Arabidopsis thaliana pathologic  
Athaliana PWY-561 Arabidopsis thaliana pathologic  
Athaliana PWY-5885 Arabidopsis thaliana pathologic  
Athaliana PWY-5971 Arabidopsis thaliana pathologic  
Athaliana PWY-5989 Arabidopsis thaliana pathologic  
Athaliana PWY66-21 Arabidopsis thaliana pathologic  
Athaliana PWY-6733 Arabidopsis thaliana pathologic  
Athaliana PWY-6803 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G20560 0.5kb upstream 0.5kb upstream 2642 true Chr1: 7119676-7122317 Arabidopsis thaliana
AT1G20560 0.5kb upstream 0.5kb upstream 500 false Chr1: 7121818-7122317 Arabidopsis thaliana
AT1G20560 0.5kb downstream 0.5kb downstream 2642 true Chr1: 7119176-7121817 Arabidopsis thaliana
AT1G20560 0.5kb downstream 0.5kb downstream 500 false Chr1: 7119176-7119675 Arabidopsis thaliana
AT1G20560 1.0kb upstream 1.0kb upstream 3142 true Chr1: 7119676-7122817 Arabidopsis thaliana
AT1G20560 1.0kb upstream 1.0kb upstream 1000 false Chr1: 7121818-7122817 Arabidopsis thaliana
AT1G20560 1.0kb downstream 1.0kb downstream 3142 true Chr1: 7118676-7121817 Arabidopsis thaliana
AT1G20560 1.0kb downstream 1.0kb downstream 1000 false Chr1: 7118676-7119675 Arabidopsis thaliana
AT1G20560 2.0kb upstream 2.0kb upstream 4142 true Chr1: 7119676-7123817 Arabidopsis thaliana
AT1G20560 2.0kb upstream 2.0kb upstream 2000 false Chr1: 7121818-7123817 Arabidopsis thaliana
AT1G20560 2.0kb downstream 2.0kb downstream 4142 true Chr1: 7117676-7121817 Arabidopsis thaliana
AT1G20560 2.0kb downstream 2.0kb downstream 2000 false Chr1: 7117676-7119675 Arabidopsis thaliana
AT1G20560 5.0kb upstream 5.0kb upstream 7142 true Chr1: 7119676-7126817 Arabidopsis thaliana
AT1G20560 5.0kb upstream 5.0kb upstream 5000 false Chr1: 7121818-7126817 Arabidopsis thaliana
AT1G20560 5.0kb downstream 5.0kb downstream 7142 true Chr1: 7114676-7121817 Arabidopsis thaliana
AT1G20560 5.0kb downstream 5.0kb downstream 5000 false Chr1: 7114676-7119675 Arabidopsis thaliana
AT1G20560 10.0kb upstream 10.0kb upstream 12142 true Chr1: 7119676-7131817 Arabidopsis thaliana
AT1G20560 10.0kb upstream 10.0kb upstream 10000 false Chr1: 7121818-7131817 Arabidopsis thaliana
AT1G20560 10.0kb downstream 10.0kb downstream 12142 true Chr1: 7109676-7121817 Arabidopsis thaliana
AT1G20560 10.0kb downstream 10.0kb downstream 10000 false Chr1: 7109676-7119675 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373385 5261 Brassicaceae View MSA
123831950 5264 Brassicales-Malvales View MSA
124346477 5266 SBM View MSA
124241808 5268 Malvidae View MSA
124066273 5270 Rosid View MSA
123743208 5271 Pentapetalae View MSA
122788469 5272 Eudicot View MSA
122048033 5273 Angiosperm View MSA
121349536 5274 Embryophyte View MSA
123427881 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.828       Low
cufflinks 11.867        
cufflinks 5.89       Low
cufflinks 11.156        
cufflinks 6.859        
cufflinks 12.269       High

0 Strain