Gene : AT1G04940 A. thaliana TAIR10
Defline:  (1 of 1) PTHR33510//PTHR33510:SF6 - FAMILY NOT NAMED // PROTEIN TIC 20-I, CHLOROPLASTIC Genomic Order:  414
Name:  ? AT1G04940 Secondary Identifier:  ? PAC:19653312
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G04940 0.5kb upstream 0.5kb upstream 2089 true Chr1: 1398682-1400770 Arabidopsis thaliana
AT1G04940 0.5kb upstream 0.5kb upstream 500 false Chr1: 1398682-1399181 Arabidopsis thaliana
AT1G04940 0.5kb downstream 0.5kb downstream 2089 true Chr1: 1399182-1401270 Arabidopsis thaliana
AT1G04940 0.5kb downstream 0.5kb downstream 500 false Chr1: 1400771-1401270 Arabidopsis thaliana
AT1G04940 1.0kb upstream 1.0kb upstream 2589 true Chr1: 1398182-1400770 Arabidopsis thaliana
AT1G04940 1.0kb upstream 1.0kb upstream 1000 false Chr1: 1398182-1399181 Arabidopsis thaliana
AT1G04940 1.0kb downstream 1.0kb downstream 2589 true Chr1: 1399182-1401770 Arabidopsis thaliana
AT1G04940 1.0kb downstream 1.0kb downstream 1000 false Chr1: 1400771-1401770 Arabidopsis thaliana
AT1G04940 2.0kb upstream 2.0kb upstream 3589 true Chr1: 1397182-1400770 Arabidopsis thaliana
AT1G04940 2.0kb upstream 2.0kb upstream 2000 false Chr1: 1397182-1399181 Arabidopsis thaliana
AT1G04940 2.0kb downstream 2.0kb downstream 3589 true Chr1: 1399182-1402770 Arabidopsis thaliana
AT1G04940 2.0kb downstream 2.0kb downstream 2000 false Chr1: 1400771-1402770 Arabidopsis thaliana
AT1G04940 5.0kb upstream 5.0kb upstream 6589 true Chr1: 1394182-1400770 Arabidopsis thaliana
AT1G04940 5.0kb upstream 5.0kb upstream 5000 false Chr1: 1394182-1399181 Arabidopsis thaliana
AT1G04940 5.0kb downstream 5.0kb downstream 6589 true Chr1: 1399182-1405770 Arabidopsis thaliana
AT1G04940 5.0kb downstream 5.0kb downstream 5000 false Chr1: 1400771-1405770 Arabidopsis thaliana
AT1G04940 10.0kb upstream 10.0kb upstream 11589 true Chr1: 1389182-1400770 Arabidopsis thaliana
AT1G04940 10.0kb upstream 10.0kb upstream 10000 false Chr1: 1389182-1399181 Arabidopsis thaliana
AT1G04940 10.0kb downstream 10.0kb downstream 11589 true Chr1: 1399182-1410770 Arabidopsis thaliana
AT1G04940 10.0kb downstream 10.0kb downstream 10000 false Chr1: 1400771-1410770 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374605 5261 Brassicaceae View MSA
123838750 5264 Brassicales-Malvales View MSA
124343434 5266 SBM View MSA
124252914 5268 Malvidae View MSA
124062125 5270 Rosid View MSA
123738974 5271 Pentapetalae View MSA
122790107 5272 Eudicot View MSA
122051187 5273 Angiosperm View MSA
121344668 5274 Embryophyte View MSA
123427529 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.062     Low High
cufflinks 0.029     Low  
cufflinks 0.043     Low  
cufflinks 0.01     Low Low
cufflinks 0.055     Low  
cufflinks 0.02     Low  

0 Strain