Gene : RUB1 A. thaliana TAIR10
Primary Identifier:  ? AT1G31340 Defline:  (1 of 4) K12158 - ubiquitin-like protein Nedd8 (NEDD8)
Genomic Order:  3105 Name:  ? AT1G31340
Secondary Identifier:  ? PAC:19654834
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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G31340 0.5kb upstream 0.5kb upstream 2114 true Chr1: 11217845-11219958 Arabidopsis thaliana
AT1G31340 0.5kb upstream 0.5kb upstream 500 false Chr1: 11219459-11219958 Arabidopsis thaliana
AT1G31340 0.5kb downstream 0.5kb downstream 2114 true Chr1: 11217345-11219458 Arabidopsis thaliana
AT1G31340 0.5kb downstream 0.5kb downstream 500 false Chr1: 11217345-11217844 Arabidopsis thaliana
AT1G31340 1.0kb upstream 1.0kb upstream 2614 true Chr1: 11217845-11220458 Arabidopsis thaliana
AT1G31340 1.0kb upstream 1.0kb upstream 1000 false Chr1: 11219459-11220458 Arabidopsis thaliana
AT1G31340 1.0kb downstream 1.0kb downstream 2614 true Chr1: 11216845-11219458 Arabidopsis thaliana
AT1G31340 1.0kb downstream 1.0kb downstream 1000 false Chr1: 11216845-11217844 Arabidopsis thaliana
AT1G31340 2.0kb upstream 2.0kb upstream 3614 true Chr1: 11217845-11221458 Arabidopsis thaliana
AT1G31340 2.0kb upstream 2.0kb upstream 2000 false Chr1: 11219459-11221458 Arabidopsis thaliana
AT1G31340 2.0kb downstream 2.0kb downstream 3614 true Chr1: 11215845-11219458 Arabidopsis thaliana
AT1G31340 2.0kb downstream 2.0kb downstream 2000 false Chr1: 11215845-11217844 Arabidopsis thaliana
AT1G31340 5.0kb upstream 5.0kb upstream 6614 true Chr1: 11217845-11224458 Arabidopsis thaliana
AT1G31340 5.0kb upstream 5.0kb upstream 5000 false Chr1: 11219459-11224458 Arabidopsis thaliana
AT1G31340 5.0kb downstream 5.0kb downstream 6614 true Chr1: 11212845-11219458 Arabidopsis thaliana
AT1G31340 5.0kb downstream 5.0kb downstream 5000 false Chr1: 11212845-11217844 Arabidopsis thaliana
AT1G31340 10.0kb upstream 10.0kb upstream 11614 true Chr1: 11217845-11229458 Arabidopsis thaliana
AT1G31340 10.0kb upstream 10.0kb upstream 10000 false Chr1: 11219459-11229458 Arabidopsis thaliana
AT1G31340 10.0kb downstream 10.0kb downstream 11614 true Chr1: 11207845-11219458 Arabidopsis thaliana
AT1G31340 10.0kb downstream 10.0kb downstream 10000 false Chr1: 11207845-11217844 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029747 5273 Angiosperm View MSA
122374606 5261 Brassicaceae View MSA
123837115 5264 Brassicales-Malvales View MSA
124349977 5266 SBM View MSA
124250054 5268 Malvidae View MSA
124062701 5270 Rosid View MSA
123752540 5271 Pentapetalae View MSA
122796500 5272 Eudicot View MSA
121351277 5274 Embryophyte View MSA
123428084 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.546     High  
cufflinks 53.371     High High
cufflinks 32.545     High  
cufflinks 39.258     High  
cufflinks 27.823     High Low
cufflinks 40.312     High  

0 Strain