Gene : AT1G48610 A. thaliana TAIR10
Defline:  AT hook motif-containing protein Genomic Order:  3890
Name:  ? AT1G48610 Secondary Identifier:  ? PAC:19652556
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G48610 0.5kb upstream 0.5kb upstream 3126 true Chr1: 17970678-17973803 Arabidopsis thaliana
AT1G48610 0.5kb upstream 0.5kb upstream 500 false Chr1: 17973304-17973803 Arabidopsis thaliana
AT1G48610 0.5kb downstream 0.5kb downstream 3126 true Chr1: 17970178-17973303 Arabidopsis thaliana
AT1G48610 0.5kb downstream 0.5kb downstream 500 false Chr1: 17970178-17970677 Arabidopsis thaliana
AT1G48610 1.0kb upstream 1.0kb upstream 3626 true Chr1: 17970678-17974303 Arabidopsis thaliana
AT1G48610 1.0kb upstream 1.0kb upstream 1000 false Chr1: 17973304-17974303 Arabidopsis thaliana
AT1G48610 1.0kb downstream 1.0kb downstream 3626 true Chr1: 17969678-17973303 Arabidopsis thaliana
AT1G48610 1.0kb downstream 1.0kb downstream 1000 false Chr1: 17969678-17970677 Arabidopsis thaliana
AT1G48610 2.0kb upstream 2.0kb upstream 4626 true Chr1: 17970678-17975303 Arabidopsis thaliana
AT1G48610 2.0kb upstream 2.0kb upstream 2000 false Chr1: 17973304-17975303 Arabidopsis thaliana
AT1G48610 2.0kb downstream 2.0kb downstream 4626 true Chr1: 17968678-17973303 Arabidopsis thaliana
AT1G48610 2.0kb downstream 2.0kb downstream 2000 false Chr1: 17968678-17970677 Arabidopsis thaliana
AT1G48610 5.0kb upstream 5.0kb upstream 7626 true Chr1: 17970678-17978303 Arabidopsis thaliana
AT1G48610 5.0kb upstream 5.0kb upstream 5000 false Chr1: 17973304-17978303 Arabidopsis thaliana
AT1G48610 5.0kb downstream 5.0kb downstream 7626 true Chr1: 17965678-17973303 Arabidopsis thaliana
AT1G48610 5.0kb downstream 5.0kb downstream 5000 false Chr1: 17965678-17970677 Arabidopsis thaliana
AT1G48610 10.0kb upstream 10.0kb upstream 12626 true Chr1: 17970678-17983303 Arabidopsis thaliana
AT1G48610 10.0kb upstream 10.0kb upstream 10000 false Chr1: 17973304-17983303 Arabidopsis thaliana
AT1G48610 10.0kb downstream 10.0kb downstream 12626 true Chr1: 17960678-17973303 Arabidopsis thaliana
AT1G48610 10.0kb downstream 10.0kb downstream 10000 false Chr1: 17960678-17970677 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029847 5273 Angiosperm View MSA
122374139 5261 Brassicaceae View MSA
123800688 5264 Brassicales-Malvales View MSA
124298068 5266 SBM View MSA
124149806 5268 Malvidae View MSA
124072577 5270 Rosid View MSA
123747528 5271 Pentapetalae View MSA
122795088 5272 Eudicot View MSA
121350617 5274 Embryophyte View MSA
123428771 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.529        
cufflinks 3.263        
cufflinks 1.63       Low
cufflinks 3.447        
cufflinks 1.383       Low
cufflinks 4.142       High

0 Strain