Gene : AT1G48780 A. thaliana TAIR10
Genomic Order:  3907 Name:  ? AT1G48780
Secondary Identifier:  ? PAC:19655406
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G48780 0.5kb upstream 0.5kb upstream 1256 true Chr1: 18041489-18042744 Arabidopsis thaliana
AT1G48780 0.5kb upstream 0.5kb upstream 500 false Chr1: 18041489-18041988 Arabidopsis thaliana
AT1G48780 0.5kb downstream 0.5kb downstream 1256 true Chr1: 18041989-18043244 Arabidopsis thaliana
AT1G48780 0.5kb downstream 0.5kb downstream 500 false Chr1: 18042745-18043244 Arabidopsis thaliana
AT1G48780 1.0kb upstream 1.0kb upstream 1756 true Chr1: 18040989-18042744 Arabidopsis thaliana
AT1G48780 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18040989-18041988 Arabidopsis thaliana
AT1G48780 1.0kb downstream 1.0kb downstream 1756 true Chr1: 18041989-18043744 Arabidopsis thaliana
AT1G48780 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18042745-18043744 Arabidopsis thaliana
AT1G48780 2.0kb upstream 2.0kb upstream 2756 true Chr1: 18039989-18042744 Arabidopsis thaliana
AT1G48780 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18039989-18041988 Arabidopsis thaliana
AT1G48780 2.0kb downstream 2.0kb downstream 2756 true Chr1: 18041989-18044744 Arabidopsis thaliana
AT1G48780 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18042745-18044744 Arabidopsis thaliana
AT1G48780 5.0kb upstream 5.0kb upstream 5756 true Chr1: 18036989-18042744 Arabidopsis thaliana
AT1G48780 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18036989-18041988 Arabidopsis thaliana
AT1G48780 5.0kb downstream 5.0kb downstream 5756 true Chr1: 18041989-18047744 Arabidopsis thaliana
AT1G48780 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18042745-18047744 Arabidopsis thaliana
AT1G48780 10.0kb upstream 10.0kb upstream 10756 true Chr1: 18031989-18042744 Arabidopsis thaliana
AT1G48780 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18031989-18041988 Arabidopsis thaliana
AT1G48780 10.0kb downstream 10.0kb downstream 10756 true Chr1: 18041989-18052744 Arabidopsis thaliana
AT1G48780 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18042745-18052744 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123838630 5264 Brassicales-Malvales View MSA
122376982 5261 Brassicaceae View MSA
124344824 5266 SBM View MSA
124244800 5268 Malvidae View MSA
124064398 5270 Rosid View MSA
123746732 5271 Pentapetalae View MSA
122786820 5272 Eudicot View MSA
122047207 5273 Angiosperm View MSA
121310707 5274 Embryophyte View MSA
123348126 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.12        
cufflinks 8.872       High
cufflinks 2.881        
cufflinks 9.073       High
cufflinks 2.608       Low
cufflinks 5.637        

0 Strain